Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 307 a.a., tyrosine recombinase XerD from Dechlorosoma suillum PS

 Score =  200 bits (509), Expect = 3e-56
 Identities = 139/310 (44%), Positives = 177/310 (57%), Gaps = 13/310 (4%)

Query: 27  SYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRR-RLSIGSADTAALRSYL 85
           ++S     + F D +  E G S N+L AYR DL   + +L ++ R  +  A  A L ++L
Sbjct: 10  AFSTQSEIDAFCDALWLEDGLSPNSLAAYRSDLQRYALWLQQQGRPPLAQAGAADLAAFL 69

Query: 86  ADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVD 145
           AD+  R   +SS AR LS+LR  +R LL++   + DP    A P +   LPKV+S A V+
Sbjct: 70  ADVAAR-MKSSSQARYLSSLRRFYRRLLAQNRISADPTLQTAMPVKASRLPKVMSEAQVE 128

Query: 146 QLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRG 205
            LLA    E      G R RA     +LE LYATGLRVSELV+L L     D  +  V G
Sbjct: 129 ALLAAPEIETPL---GQRDRA-----MLETLYATGLRVSELVNLKLHEVSFDMGVARVFG 180

Query: 206 KGDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLK 265
           KG KERLVPL   A   +  YL +     A  D     +LF +      +TRQ F   +K
Sbjct: 181 KGSKERLVPLGEVALDWLKSYLND--GRNALLDNRLSDFLFVT-ARGTAMTRQMFWTLVK 237

Query: 266 DLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLK 325
             A  AG+ P  +SPHVLRHAFA+HLL++GADLR+VQ LLGH+DISTTQIYTHV  ERLK
Sbjct: 238 KYALVAGMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK 297

Query: 326 SLVRDLHPLG 335
            L    HP G
Sbjct: 298 DLHAVHHPRG 307