Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 297 a.a., site-specific tyrosine recombinase XerD from Pantoea sp. MT58

 Score =  228 bits (582), Expect = 1e-64
 Identities = 136/304 (44%), Positives = 188/304 (61%), Gaps = 11/304 (3%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D+ LTE FLD +  E+  + NTL +YR+DL  L+ +L+  +L++ S     L+ +LA+  
Sbjct: 3   DSDLTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHQLTLLSVTPLDLQQFLAERL 62

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
             G+  +S AR LSA+R LF++L  E++R DDP+A+L+ PK  + LPK LS A V++LL 
Sbjct: 63  EGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQ 122

Query: 150 CARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDK 209
               +I            R   +LE+LYATGLRVSEL+ L LS       ++ V GKGDK
Sbjct: 123 APNIDIPLE--------LRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDK 174

Query: 210 ERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAA 269
           ERLVPL   A   + +Y+E         +G     +FPS   +  +TRQ F   +K  A 
Sbjct: 175 ERLVPLGEEAVYWLEQYMEH--GRPWLLNGQTLDVMFPS-NRAQQMTRQTFWHRIKHYAT 231

Query: 270 RAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVR 329
            AG+    +SPHV+RHAFA+HLL++GADLR+VQ LLGHSD+STTQIYTHV  ERL+ L +
Sbjct: 232 LAGIDSEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 291

Query: 330 DLHP 333
             HP
Sbjct: 292 QHHP 295