Pairwise Alignments

Query, 837 a.a., PAS-domain containing protein from Rhodopseudomonas palustris CGA009

Subject, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  137 bits (344), Expect = 3e-36
 Identities = 120/410 (29%), Positives = 192/410 (46%), Gaps = 61/410 (14%)

Query: 448 GGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNL 507
           G VT +     E L+L+R+     ++ R  L+ LSEAV    ++GC  LFN   A+ W+ 
Sbjct: 427 GFVTDITVRKAEQLELERQQ----EMNRRLLEALSEAVIACDADGCLTLFNEK-AKQWH- 480

Query: 508 SAEALQSQPHIEAIEEW-----------CRPLFDDDV-FWQALRG--------AITGIDD 547
             +     P     +EW             PL  +++   +AL G         + G  +
Sbjct: 481 GTDVAPVPP-----DEWPTRYQLYHPDGVTPLRPEEIPLLRALHGEHVCDHEMVLLGQGE 535

Query: 548 RRHVLLKIE---RKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADR 604
            RHVL   +     DG          P GA  +   DIT+ + +ER  RE          
Sbjct: 536 PRHVLSNADPLYTSDGQ---------PMGAVAV-LHDITERKRIERLQRE---------- 575

Query: 605 IKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINNI 664
               F+  VS+ELR+PLT+I G    +  +  G + E   E ++    ++  L A+I+++
Sbjct: 576 ----FISTVSHELRTPLTSITGALGLICSNVMGEVPEAMHELLDIAQQNSQRLNALIDDL 631

Query: 665 LDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRV 724
           LD+  + AG M   L    ++  ++ A    ++   +  + LQ+   PA+   + D  R+
Sbjct: 632 LDMDKLHAGKMRFALLRQPLQPQLELALRSNRNYAEQHGVVLQLGACPAVTVEI-DAMRL 690

Query: 725 VQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLF-ESDP 783
            QVL NLL+NA  FSP+   V L+    + RV  +V D GPGI+  F+E++F  F ++D 
Sbjct: 691 QQVLSNLLSNAAKFSPAGEQVELSATLSDGRVRISVRDRGPGISADFRERVFQKFAQADS 750

Query: 784 QGSRHR-GAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQ 832
             SR + G GLGL++ +  +E  GG++  ES  G G     E P E  A+
Sbjct: 751 SDSRQQGGTGLGLAISKELIERMGGQIGFESEPGHGACFWFELPSEGLAK 800



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 324 GIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRK 375
           G   D T   A    LER  + +RR L+ LS  V   DA   L+ +N+  ++
Sbjct: 427 GFVTDITVRKAEQLELERQQEMNRRLLEALSEAVIACDADGCLTLFNEKAKQ 478



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 463 LKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNLSAEAL 512
           L  RY     +Q+  LD+ S AV V   +G     NP   RM   S + L
Sbjct: 172 LAHRYAEQAALQQAMLDSASSAVLVTRPDGVVTSVNPTAERMLGHSEQEL 221