Pairwise Alignments

Query, 837 a.a., PAS-domain containing protein from Rhodopseudomonas palustris CGA009

Subject, 1134 a.a., sensor histidine kinase from Sinorhizobium meliloti 1021

 Score =  143 bits (361), Expect = 5e-38
 Identities = 97/362 (26%), Positives = 172/362 (47%), Gaps = 7/362 (1%)

Query: 471  IDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFD 530
            ID  R  L+  ++ V V G +G  +  N   + +++     ++ +P         +    
Sbjct: 767  IDELRSILETATDGVVVLGRDGDIRTMNRSASALFDYDEADMRGKPFAALFAHESQKAVI 826

Query: 531  DDVFWQALRGAITGIDDRRHVLLKIERKDGSVLACKTMPLPDGAT--MLTFQDITDTENV 588
            D +   +  G  + ++D R V+ + E   G +    T+     +       +DIT  +  
Sbjct: 827  DYLQGLSGHGVASVLNDGREVIGR-EAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRT 885

Query: 589  ERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTE-KQAEYV 647
            E  LR    A ETA+  K +F+  VS+E+R+PL  IIGF+  ++    GP+   +  EY 
Sbjct: 886  EEELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYA 945

Query: 648  NYITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQ 707
              I  S   ++ I+N++LD++ I+AG M L+ G +D+ +A+  A   +Q +    ++ ++
Sbjct: 946  GDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIR 1005

Query: 708  IDVDPAIESFVGDERRVVQVLYNLLANAIDFSPSQGTVRL-TVRRGETRVAFTVTDSGPG 766
              +  ++   V D+R + Q+  N+LANAI F+PS G + + T       V   + D+G G
Sbjct: 1006 TSLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIG 1065

Query: 767  IAPAFKEKMFDLFESDPQGSRHR--GAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCE 824
            +     ++    F     G R R  G GLGL L ++  E +  +  + SA   GT V   
Sbjct: 1066 MTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEIS 1125

Query: 825  FP 826
            FP
Sbjct: 1126 FP 1127



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 63/259 (24%), Positives = 95/259 (36%), Gaps = 41/259 (15%)

Query: 35  RAADDHLAAITSSLLLDLN-----RHEMMTLIIALAALGFSVMSAIMLVRTRQRAVAREA 89
           RAA   LAA+     L +      R   +   + L  +G    + +  V    +A++ EA
Sbjct: 72  RAAAAQLAAVGDRRQLLIRMASGFRRLPLNAAVELIRIGPGEEAILFTVPNNGKALSTEA 131

Query: 90  GLRADLQGLQAESDRFQALLFAEPQVL--------ISWAAGDSRPQVSG-----DTALFL 136
              A + GL    D   A+L A+  V+        +  +A   R  V+      D  +  
Sbjct: 132 RAEAMIAGLDGP-DTHMAVLDADGTVIAGSPGFESLGLSADIRRTLVAAAASDKDRLIKR 190

Query: 137 PLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAV 196
           P+ T+     R+ A    +   PAL +  AV+A+L+K E            + EA+G A 
Sbjct: 191 PVATEKG---RLPAAVGKISDHPALHLLFAVEAILEKSE------------TGEAVGAAA 235

Query: 197 GGQAVVRIRELSGVRRELADM------TRRFKALQEETEMLRGFATAAPWPIWTRRSDGT 250
             QA+          RE          T +     EE E       AAP        DGT
Sbjct: 236 AEQAIPAAPAAPAETREAVPSSAAPAETEQPAGRLEEAEPAPSPEAAAPAEHEASVGDGT 295

Query: 251 LSFANAAYARATDASDAAD 269
              A    A   D ++AAD
Sbjct: 296 DDEAQGELA-PQDEAEAAD 313