Pairwise Alignments

Query, 837 a.a., PAS-domain containing protein from Rhodopseudomonas palustris CGA009

Subject, 801 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  400 bits (1028), Expect = e-115
 Identities = 258/689 (37%), Positives = 371/689 (53%), Gaps = 27/689 (3%)

Query: 160 ALQMDHAVDALLDKGEGFLLQLV-TSNGRSIEAMG---RAVGGQAVVRIRELSGVRRE-- 213
           A  ++  +  L  +G GF+L L+  ++GR +  +G    A  G A+  +  +  V  E  
Sbjct: 115 AQALEGMIAVLRREGRGFVLDLLLAASGRRVRTVGIRANAGDGHALADLLWMRDVTEETR 174

Query: 214 LADMT-RRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYARATDASDAADAIG 272
           + D+  RR +ALQ E + LR    A P PIWTR     +   N A ARA D   A DA+ 
Sbjct: 175 VGDVQGRRAQALQAERDRLRAVVDALPAPIWTRDDSLAIGDGNTALARALDLGSAGDALT 234

Query: 273 RNLELLDSGD----RAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSGG-----SA 323
              EL         RA  AR+   G     R   V+ GER+  ++    +S G     + 
Sbjct: 235 ARRELAPGATGQEMRALAARSRAAGRPARARFHAVLDGERKLLEITETPLSEGPLRGHTV 294

Query: 324 GIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIF 383
           GIA D T    + + LER  +AH   L++L S +A+F    RLSF+N ++  LW L+  +
Sbjct: 295 GIAQDITPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWGLESDW 354

Query: 384 LDSHPDDSTVLDRLRAERKLPEERDFKAWK-NKLHEAYRAVEAEKDVWYLPDGRAVSIVT 442
           L+  P     L+R R  R+LPE  DF A+K  +L    + +   +D+ +LPDG  +  V 
Sbjct: 355 LNGEPSYGDFLERQRENRRLPEVADFPAYKAGELGYFTKLLRPREDILHLPDGATLRRVI 414

Query: 443 TPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFA 502
            P+P GG+   F+DVT+SL L+R Y  L  VQRET+D+L EAVAVFG+NG  +L NP F+
Sbjct: 415 APHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGRLRLSNPAFS 474

Query: 503 RMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDRRHVLL-KIERKDGS 561
           ++W  S     S+P   A+ +        D  W+  R  +   D+       ++ R+DG 
Sbjct: 475 QLW--SGAGTDSEPQAAALLDDMEAAMIADGAWETFRRRLCVRDESAGPRNGRLVRRDGR 532

Query: 562 VLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRSPL 621
            L   T+PLPDG  +L+  DITD   VE+AL ER EAL  AD +K +F+ +VSYELR+PL
Sbjct: 533 HLDYATVPLPDGGLLLSILDITDRVRVEQALSERTEALRAADMMKSEFIANVSYELRTPL 592

Query: 622 TTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGP 681
           TTI GF+  LS +  G L  +Q EY   IT ++  ++ +I+ I DL S+ AG + L L  
Sbjct: 593 TTISGFSEILSGAYYGELNTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLALELDA 652

Query: 682 IDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFSPS 741
            DI  A+ A     ++   R  + L  D  P     V DE R+ Q+L++L++NAI  + +
Sbjct: 653 FDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLMSNAITGTDA 712

Query: 742 QGTVRLTVRRGET----RVAFTVTDSGPGIAPAFKEKMFDLFESDPQGSRHRGAGLGLSL 797
            G V L V+R +T     + FTV D+G G+    + +    FES  +G R  GAGLGL+L
Sbjct: 713 GGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTR---AFESFAKGPRADGAGLGLAL 769

Query: 798 VRSFVELHGGKVLVESAVGRGTSVTCEFP 826
           VR FVELHGG V + S  G GT+VT   P
Sbjct: 770 VRRFVELHGGAVDLVSVPGEGTTVTVRIP 798



 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 113/457 (24%), Positives = 176/457 (38%), Gaps = 70/457 (15%)

Query: 48  LLLDLNRHEMMTLIIALAALGFSVMSAIMLVR--TRQRAVAREAGLRADLQGLQAESDRF 105
           LLL  +   + T+ I   A     ++ ++ +R  T +  V    G RA  Q LQAE DR 
Sbjct: 136 LLLAASGRRVRTVGIRANAGDGHALADLLWMRDVTEETRVGDVQGRRA--QALQAERDRL 193

Query: 106 QALLFAEPQVLISWAAGDSRPQVSGDTALFLPLETQSR----------------QPQRVL 149
           +A++ A P  +  W   DS     G+TAL   L+  S                 Q  R L
Sbjct: 194 RAVVDALPAPI--WTRDDSLAIGDGNTALARALDLGSAGDALTARRELAPGATGQEMRAL 251

Query: 150 AFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAVG-GQAVVRIRELS 208
           A  +     PA    HAV   LD GE  LL++  +        G  VG  Q +  I E+ 
Sbjct: 252 AARSRAAGRPARARFHAV---LD-GERKLLEITETPLSEGPLRGHTVGIAQDITPIEEVE 307

Query: 209 GVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYARATDASDAA 268
                    +R  +  +   E+L    +A    I     D  LSF NAA+A        +
Sbjct: 308 ---------SRLERETEAHAEVLERLGSA----IAIFGGDTRLSFHNAAFASLWGLE--S 352

Query: 269 DAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYD---------------- 312
           D +       D  +R    R L +  ++    P    GE  Y+                 
Sbjct: 353 DWLNGEPSYGDFLERQRENRRLPEVADF----PAYKAGELGYFTKLLRPREDILHLPDGA 408

Query: 313 ----VRALKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSF 368
               V A    GG      D T++ AL  +  ++    R T+D L   VAVF A  RL  
Sbjct: 409 TLRRVIAPHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGRLRL 468

Query: 369 YNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKD 428
            N ++ +LW       DS P  + +LD +  E  +  +  ++ ++ +L     +      
Sbjct: 469 SNPAFSQLW--SGAGTDSEPQAAALLDDM--EAAMIADGAWETFRRRLCVRDESAGPRNG 524

Query: 429 VWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKR 465
                DGR +   T P P+GG+     D+T+ + +++
Sbjct: 525 RLVRRDGRHLDYATVPLPDGGLLLSILDITDRVRVEQ 561