Pairwise Alignments

Query, 837 a.a., PAS-domain containing protein from Rhodopseudomonas palustris CGA009

Subject, 773 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (354), Expect = 2e-37
 Identities = 94/278 (33%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 553 LKIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHH 612
           +++  KDG  L  +      G T++   DIT+ +  ERAL +  E  E A+R K +F+ +
Sbjct: 488 IEVRGKDGRWLLIRQSATSSGYTLILGTDITELKRRERALADAKEVAEYANRAKSEFLAN 547

Query: 613 VSYELRSPLTTIIGFAHFLSDSSTGPLTEK-QAEYVNYITTSTNALMAIINNILDLASID 671
           +S+ELR+PL  IIGF+        G L      +Y   I  S   L+ II++ILDLA I+
Sbjct: 548 MSHELRTPLNAIIGFSDITRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIE 607

Query: 672 AGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNL 731
           AG + L+   +D  + +D+A + +  R    +IAL   +   +     D  R+ QVL NL
Sbjct: 608 AGELGLDEEEVDAARLVDSAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINL 667

Query: 732 LANAIDFSPSQGTVRLTVR-RGETRVAFTVTDSGPGIAPAFKEKMFDLF--ESDPQGSRH 788
           L+NA+ ++   G V +T R  G   +A +V D+G G+  A  +     F     P   R 
Sbjct: 668 LSNAVKYTQEDGAVAVTARLAGGDGLAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQ 727

Query: 789 RGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFP 826
            G GLGL L R   E H G + + S  G GT+VT   P
Sbjct: 728 GGTGLGLPLTRKLTEAHQGCLTIASRPGEGTTVTILLP 765



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 34/197 (17%)

Query: 343 ADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLD------RIFLDS-HPDDSTVLD 395
           AD  R   D    G+A+ D +RR    N    +L  +       + + DS HP+     D
Sbjct: 158 ADRFRSLFDLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDSVHPE-----D 212

Query: 396 RLRAERKLPE--ERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSI-----VTTPNPEG 448
           R R ER        D KA    L    R V A        DGR V +     V    P+G
Sbjct: 213 RGRDERFFASLLRNDDKASTTNL----RLVAA--------DGRVVPVTLSLGVMRDGPKG 260

Query: 449 ---GVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMW 505
               +  L  D++E +D +          R  ++  ++A+ +   +G  ++ N   AR+ 
Sbjct: 261 QSDQILVLVQDISERVDWEATKAENEARLRSLINATTDAIFLLDPDGAIRVINRAGARLL 320

Query: 506 NLSAEALQSQPHIEAIE 522
             +A A   +   E ++
Sbjct: 321 GTTARAAAGRSFYEFLD 337