Pairwise Alignments

Query, 166 a.a., transcription antitermination factor NusB from Pseudomonas fluorescens SBW25-INTG

Subject, 134 a.a., transcription antitermination protein NusB (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (311), Expect = 6e-34
 Identities = 56/132 (42%), Positives = 87/132 (65%)

Query: 24  KNEKRRAARQLATQALYQRQIAGASLNEIEAQFRVDNDFTFADLPYFHDILHGVHAHLTE 83
           K  +RR AR+LA QA+Y  Q++G ++ ++E +F  +      D+ YF ++L G      +
Sbjct: 2   KPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQKIDGVDVSYFRELLSGTTTKSAQ 61

Query: 84  IDAALAPCLDLTIDELDPVELCVMRLSAWELLYRVDVPYRVVINEGIELAKVYGSTDGHK 143
           +D  + P L+   DE+ P+E  V+R++ +EL +R DVPY+V INE IELAK +G+ DGHK
Sbjct: 62  LDELIMPHLERPFDEVSPIEKAVLRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHK 121

Query: 144 FVNGVLDKLAPR 155
           FVNG+LDK+  +
Sbjct: 122 FVNGILDKIVAK 133