Pairwise Alignments

Query, 310 a.a., IS110 family transposase from Pseudomonas fluorescens SBW25-INTG

Subject, 309 a.a., Transposase, IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902 from Pseudomonas syringae pv. syringae B728a

 Score =  269 bits (688), Expect = 5e-77
 Identities = 142/304 (46%), Positives = 201/304 (66%)

Query: 6   AGIDVSSGSLEIRVDQLDVAMSCSNSQSDFPGLIGWLTLHRVGRVLLEATGGYERKVMKA 65
           AGIDVS  +L++ +      +   N++     +  +L+ H+V RVL+EATGGYE+  +K 
Sbjct: 5   AGIDVSKATLQVALFPKADELCVPNTEEGLASIAEYLSAHQVERVLVEATGGYEKLSVKL 64

Query: 66  LQAAGFEVIRINPCRAKSFARAMGQQAKTDPIDARLLAQFAAVIKSPDSRVTSAEQDDLR 125
           L  AGF+V RINP R++ FA AMG++AKTDPIDA++LA FA+ +++        E++ L 
Sbjct: 65  LANAGFKVQRINPVRSRQFALAMGKRAKTDPIDAQMLAMFASSLEAKGFAKPDEEREVLL 124

Query: 126 ALVQQREHFVQQRDDDKRRLKTTSSDVVKPALQSHIDYLQKVLKELESLIRQSAERLDRK 185
            LV  R + +QQRDD++RR+K      V     +    L+  +K ++ L+   A ++D +
Sbjct: 125 ELVNLRNNLLQQRDDNRRRIKQALLPSVVYIYLALEASLKVQIKAVDQLVDAQARKVDSE 184

Query: 186 KVALLCSVKGIGLVTAASLMSYLPELGEVGRHQIAALSGTAPYNDDSGKHKGKRHISGGR 245
            +  L +VKG+G VT ASL  YLPELG++ R QIAAL+G APYN+DSG   GKR I GGR
Sbjct: 185 LLQRLHAVKGVGPVTIASLFCYLPELGDLSRGQIAALAGVAPYNNDSGSKVGKRQIYGGR 244

Query: 246 FAARRSLYMACWSVIRFQPEFAARYKALREKGKCAKVALIACMRVLLVRLNAMIRDGSEW 305
              RR+ YM    ++R+  +F  RY  LR KGKCAKVAL+ACMRVLL+RLNAM+RDG+ W
Sbjct: 245 TKLRRATYMCALVMVRYNADFKERYARLRAKGKCAKVALVACMRVLLIRLNAMVRDGTPW 304

Query: 306 KEHA 309
           ++HA
Sbjct: 305 RDHA 308