Pairwise Alignments

Query, 310 a.a., IS110 family transposase from Pseudomonas fluorescens SBW25-INTG

Subject, 321 a.a., transposase from Sinorhizobium meliloti 1021

 Score =  162 bits (409), Expect = 1e-44
 Identities = 108/320 (33%), Positives = 167/320 (52%), Gaps = 30/320 (9%)

Query: 6   AGIDVSSGSLEIRVDQLDVAMSCSNSQSDFPGLIGWLTLHRVGRVLLEATGGYERKVMKA 65
           AGID     L++    +       N+   +  L  WL    +GRV +EA+GGYER V+  
Sbjct: 9   AGIDTGKIWLDVATYPVSDKQKVPNNADGWQTLADWLERQGIGRVGIEASGGYERDVIAY 68

Query: 66  LQAAGFEVIRINPCRAKSFARAMGQQAKTDPIDARLLAQFAAV----IKSPDSRVTSAEQ 121
           L   GFEV+ + P + ++F     ++AK D +DA L+A+ AA       +PDSR+ +  +
Sbjct: 69  LHQRGFEVVLLQPRQVRAFGLYKLRRAKNDQLDAALIAECAARSDARCHAPDSRLIAFGE 128

Query: 122 ---------DDLRALVQQREHFVQQRDDDKRRLKTTSSDV--VKPALQSHIDYLQKVLKE 170
                     D+  L  +RE F      D+  L+     +  +K   ++ +  LQ  ++E
Sbjct: 129 WLLFIEQIEADIACLKTRRERFT-----DRWILEEIDRSIGELKSRCKAQLALLQAAVRE 183

Query: 171 LESLIRQSAERLDRKKVALLCSVKGIGLVTAASLMSYLPELGEVGRHQIAALSGTAPYND 230
            + L R         K+ L+ S+ GIG+ TA +L+  +PELG V R +IAAL+G APY+D
Sbjct: 184 HDDLAR---------KLDLIESIDGIGIRTALTLVILMPELGRVDREEIAALTGVAPYDD 234

Query: 231 DSGKHKGKRHISGGRFAARRSLYMACWSVI-RFQPEFAARYKALREKGKCAKVALIACMR 289
            SGK +G+RHI+GGR   RR+L+ A      R+       Y  L  KGK  K ALIAC+R
Sbjct: 235 QSGKREGERHIAGGRARVRRALFNAALPASQRWNETLVELYDRLTAKGKSHKAALIACVR 294

Query: 290 VLLVRLNAMIRDGSEWKEHA 309
            L++  N +++  + W + A
Sbjct: 295 KLIIFANTVVKRQTPWTKSA 314