Pairwise Alignments

Query, 246 a.a., flagellar motor protein from Pseudomonas fluorescens SBW25-INTG

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella loihica PV-4

 Score =  140 bits (352), Expect = 3e-38
 Identities = 84/247 (34%), Positives = 143/247 (57%), Gaps = 7/247 (2%)

Query: 1   MDVLSLIGIIMAFVAIIGGNYLEGGHLGALANGPAALIVIGGTVGAALLQSPMSSFKRAM 60
           MD+ +LIG+I AF  IIG     GG +    + P+ LIV+ G++   +++  +  F  A+
Sbjct: 1   MDLATLIGLIGAFGFIIGAMVSSGG-IAIFVDVPSVLIVMIGSLFVVMMKFNLKQFLGAV 59

Query: 61  QILIWIIFPPRVDLPGG-IDRVVNWSLTARKEGLLGLEGVADAE-PDSYARKGLQLLVDG 118
           +I     F  ++D P   I++ V  +  ARK G L LE   +AE  +S+ +K + +LVDG
Sbjct: 60  KIAAKA-FMFKIDKPDELIEQSVTMADAARKGGFLALE---EAEISNSFMQKAVDMLVDG 115

Query: 119 AEPEAIRSILEVDFYTQESRDINAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQL 178
            + E +R  LE D    E R      +F+++G  AP +G+IG ++GL+ ++ N+ DP  +
Sbjct: 116 HDGEVVREALEKDIALTEERHKTGISIFKALGDVAPAMGMIGTLIGLVAMLSNMDDPKSI 175

Query: 179 GSGIAVAFVATIYGVASANLVLLPVASKLKSIAMRQSRYREMLLEGILSIAEGENPRSIE 238
           G  +AVA + T+YG   AN++ LP+A KL      +   R ++++ +L+I +G+NPR IE
Sbjct: 176 GPAMAVALLTTLYGAIIANMIALPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIE 235

Query: 239 LKLQGFM 245
             L+ ++
Sbjct: 236 GFLKNYL 242