Pairwise Alignments

Query, 586 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  243 bits (621), Expect = 9e-69
 Identities = 139/331 (41%), Positives = 202/331 (61%), Gaps = 24/331 (7%)

Query: 252 PQALVGASAAFNAATQALQRVALTPATVLISGESGVGKEMFARQLHQLSHRHERPFVALN 311
           P  ++G S + +     +  +A + ATVL++GESG GKE+ AR +H  S R   P+V +N
Sbjct: 144 PAGIIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVN 203

Query: 312 CAAIPDNLIEAELFGVERGAYTGATHSRPGRFERAQGGTLFLDEITSLSLAGQSKLLRAL 371
           CAA+ + L+E+ELFG E+GA+TGA   R GRF+ A  GT+FLDEI   SL  Q+KLLRA+
Sbjct: 204 CAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAI 263

Query: 372 QEREIERVGGVRGIKVDVRVVAATNIDLRKAVADGTFREDLFYRLNVYPIALPPLRERRD 431
           QEREI+RVG  + ++VDVR++AATN DLR  V  G FR+DL+YRLNV  + +PPLRER +
Sbjct: 264 QEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVE 323

Query: 432 DIPLLINAFLTRFCQEYARTPAGLTMRALKVLLRYDFAGNVRELQNLIERGLIASDEGQA 491
           DIPLL   FL RF ++  +   G T +A+  LL++D+ GNVREL+N  ER ++       
Sbjct: 324 DIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAERAVVL------ 377

Query: 492 IDLVHLFRNE-PMPTDPYGLDDHGSLSNTGLQAPRAALLDTLGQLDQGFSIDGLESRLIN 550
             LV  + +E  +P    G D   + +      PR            G +++ +E   I 
Sbjct: 378 --LVGEYISERELPHAIAGGDGDATCA-----VPRF----------NGMTLEEIERAAIL 420

Query: 551 EALQHNAGNLAAAARLLGLSRAQFAYRLKKH 581
           +A+  + GN + AAR LG++R     +L ++
Sbjct: 421 DAMDASEGNKSEAARRLGITRKTLHAKLNRY 451