Pairwise Alignments

Query, 543 a.a., cyclic peptide export ABC transporter from Pseudomonas fluorescens SBW25-INTG

Subject, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 78/317 (24%), Positives = 145/317 (45%), Gaps = 30/317 (9%)

Query: 235 VLNWGNAVFYLLIGMVLFAAPHFIELSVSLVTGYILAILYM---ITPLSELMHALPTLGR 291
           V N  N +    +  V+    + +  ++  + G I A++     I P+++L   +     
Sbjct: 395 VSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAPMAQLAGLMTRANH 454

Query: 292 ASVALNKIRAL---EGEMQGASETLETFAPTRVRSLVCRDVTHTYYREREDGHFTLGPIN 348
            + AL ++  L   E E +     +     ++ R +   +  H  +         L P++
Sbjct: 455 TASALRQLNELMLQEDEFENKGHLV-----SKQRLIGKINADHVGFSYPGSEKPVLHPLS 509

Query: 349 VTLKASETVFITGGNGSGKTTLALLLTGLYRPESGDVMLDEQVSSSQDNHHFRQHFSAIF 408
           +T+   E + I G NGSGK+TLA LL GL++P +G +  D   S+       R++F  + 
Sbjct: 510 LTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLRRNFGYLP 569

Query: 409 TDFCLF-----ENLFDG----DDPQLVQQAQ----DYLVHLQLDH-KVQIDQGRLTTLAL 454
            D  LF     +N+  G     + QL++  Q        HL+ +    Q+ +G    ++L
Sbjct: 570 QDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGEG---GMSL 626

Query: 455 STGQRKRLALLSAYLDDRPCYLFDEWAADQDPVFKHFFYTRILSDLRARGKLVIVISHDD 514
           S GQR+ +AL  A L+D P  L DE  A  D   +  F  R + ++ ++ + +++I+H  
Sbjct: 627 SRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQF-IRSMQNV-SKDRTLLLITHKM 684

Query: 515 AYFGLADRLLRIEHGRL 531
               L DR++ +E G +
Sbjct: 685 HLLQLVDRIIVLERGHV 701