Pairwise Alignments

Query, 310 a.a., IS110 family transposase from Pseudomonas fluorescens SBW25-INTG

Subject, 319 a.a., IS110 family transposase from Rhodopseudomonas palustris CGA009

 Score =  155 bits (392), Expect = 1e-42
 Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 8/300 (2%)

Query: 6   AGIDVSSGSLEIRVDQLDVAMSCSNSQSDFPGLIGWLTLHRVGRVLLEATGGYERKVMKA 65
           AG+D     L++ +          N       +I  L    V RV+LEA G Y   ++KA
Sbjct: 11  AGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERSGVRRVVLEAIGPYAEPLVKA 70

Query: 66  LQAAGFEVIRINPCRAKSFARAMGQQAKTDPIDARLLAQFAAVIKSPDSRVTSAEQDDLR 125
           L  AGFEV  +NP R K+F  A G +AKTD +DARL+A+FA  +      + +  Q +L+
Sbjct: 71  LSVAGFEVGIVNPRRIKAFREAEGSRAKTDRLDARLIARFALTMPETLRPLPTDTQLELK 130

Query: 126 ALVQQREHFVQQRDDDKRRLKTTSSDVVKPALQSHIDYLQKVLKELESLIRQSAERLD-- 183
           AL  +R    +    +K R+K     ++   L SH   +  +  + +++  + A+R+   
Sbjct: 131 ALSLRRRQLTEMIAMEKTRMKQVRGTLL---LDSHRAAIAALSAQCQAIEAELAKRIGDD 187

Query: 184 ---RKKVALLCSVKGIGLVTAASLMSYLPELGEVGRHQIAALSGTAPYNDDSGKHKGKRH 240
              R+ + +L S+ GIG   A  L++ LPELG+  R  IA+L+G AP+   SG    +  
Sbjct: 188 AELRRVLHILKSIPGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSGAAPPRAA 247

Query: 241 ISGGRFAARRSLYMACWSVIRFQPEFAARYKALREKGKCAKVALIACMRVLLVRLNAMIR 300
           I+GGR   R +LYMA     R  P+    Y ALR +GK  KVALIA  R LLV  NA+++
Sbjct: 248 IAGGRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLLVTANALVK 307