Pairwise Alignments

Query, 179 a.a., sigma-70 family RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

Subject, 181 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 14  FRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDH 73
           F   Y      LR+R  + + A ++  D + +     D + V++P A+LF+MA N   D 
Sbjct: 13  FEANYQQFRARLRRRLGSDAMAVEVLHDTWLRLDRIGDASAVQKPEAYLFRMALNEASDR 72

Query: 74  WRKQKVRQTAHHDQADRDVEPATDEQNEPMVAAQRLQRLEQLKEVLAELSPRRREALMLH 133
                 + +A   +  R +   +D+  +P   AQ  + + QL  VL EL PRR+  ++L 
Sbjct: 73  READARKLSAAEVETLRHM---SDQMLDPEQIAQARREVAQLAAVLDELPPRRKAIILLA 129

Query: 134 RFEGLSQTQIAERMGISTSMVEKHIAFALLHCKRRLQ 170
           R   +  T IA R GIS  MVEK +  AL HC RRL+
Sbjct: 130 RVHEMKHTDIAARFGISPRMVEKELVAALEHCARRLE 166