Pairwise Alignments

Query, 767 a.a., YgiQ family radical SAM protein from Pseudomonas fluorescens SBW25-INTG

Subject, 780 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  955 bits (2468), Expect = 0.0
 Identities = 467/774 (60%), Positives = 576/774 (74%), Gaps = 16/774 (2%)

Query: 1   MQTAKPLFDYPKYWAECFGPAPFLPMSREEMDQLGWDSCDIIIVTGDAYVDHPSFGMAII 60
           MQ    LF YPKY      PAPFLPMSR+EM +LGWDSCDIIIVTGDAYVDHPSFGMA+I
Sbjct: 1   MQVESTLFTYPKYLGRNEKPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVI 60

Query: 61  GRLLESQGFRVGIIAQPNWQSKDDFMKLGEPNLFFGVAAGNMDSMINRYTADKKIRSDDA 120
           GR+LE+QGFRVGII+QP+W SK+DFMKLG+PNL+FGV AGNMDSMINRYTA++++R DDA
Sbjct: 61  GRMLEAQGFRVGIISQPDWSSKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRLRHDDA 120

Query: 121 YTPGGMAGKRPDRASLVYSQRCKEAYKNVPIVLGGIEASLRRIAHYDYWQDRVRNSILID 180
           YT G + GKRPDRA  VY+QRCKEAYK VP+V+GGIEASLRRIAHYDYW D+VR S+++D
Sbjct: 121 YTAGNVGGKRPDRAVTVYTQRCKEAYKQVPVVIGGIEASLRRIAHYDYWSDKVRRSVILD 180

Query: 181 ATADILLYGNAERAIVEVAQRLSWGHKIEDITDVRGTAFIRRDTPAGWYEVDSTRIDRPG 240
           A ADIL+YGNAER +VE++ RL+ G  + DI DVRGT  IR++   GW  +DS ++D+  
Sbjct: 181 AKADILVYGNAERPLVELSHRLAAGESVGDIHDVRGTTVIRKEPLYGWKGMDSRKLDQLH 240

Query: 241 KVDKIINPYVNTQDTQACAIEQEKGPVD----DPEEAKVVQILASPRMTRDKTVIRLPSV 296
           K+D + NPY    D   C  +   GP D    D +  K + +        +KT + LPS 
Sbjct: 241 KIDPVPNPY--GADDVGC--QNLSGPSDVKVFDNDAPKPISVQPPRPKPWEKTYVLLPSY 296

Query: 297 EKVRGDAVLYAHANRVLHLETNPGNARALVQKHGEVDVWFNPPPIPMTTEEMDYVFGMPY 356
           EKV GD  LYAHA+R+LH E NPG ARAL Q HGE  +W NPP  P+ T+EMD VF + Y
Sbjct: 297 EKVAGDKYLYAHASRILHQEQNPGCARALFQPHGERAIWVNPPAWPLNTDEMDGVFDLAY 356

Query: 357 ARVPHPAYGKEKIPAYDMIRFSVNIMRGCFGGCTFCSITEHEGRIIQNRSEESIIREIEE 416
            RVPHP YGKEKIPAYDMI+ S+NIMRGCFGGC+FCSITEHEGRIIQ+RS++SII+EI++
Sbjct: 357 KRVPHPVYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQDSIIKEIKD 416

Query: 417 IRDKVPGFTGVISDLGGPTANMYRIACKSPEIESACRKPSCVFPGICPNLNTDHSSLIQL 476
           I+DKVPGFTGVISDLGGPTANMYR+ C S + ES CR+ SCVFP IC +L+T+H + I L
Sbjct: 417 IQDKVPGFTGVISDLGGPTANMYRLGCTSVKAESTCRRLSCVFPSICGHLDTNHQATIDL 476

Query: 477 YRSARALPGVKKILIASGLRYDLAVESPEYVKELVTHHVGGYLKIAPEHTEEGPLNQMMK 536
           YR+AR +PG+KK+LIASG+RYDLA E P YVKEL +HHVGGYLKIAPEHTEEGPLN+MMK
Sbjct: 477 YRAARDVPGIKKVLIASGVRYDLATEDPRYVKELASHHVGGYLKIAPEHTEEGPLNKMMK 536

Query: 537 PGIGSYDKFKRMFEKYTKEAGKEQYLIPYFIAAHPGTTDEDMMNLALWLKGNGFRADQVQ 596
           PG+G+YDKFK +F+KY+ EAGK+QYLIPYFI+AHPGTTDEDM+NLALWLKG  F+ DQVQ
Sbjct: 537 PGMGTYDKFKELFDKYSAEAGKKQYLIPYFISAHPGTTDEDMVNLALWLKGEKFKLDQVQ 596

Query: 597 AFYPSPMATATAMYHSGKNPLRKVTYKSDAVTIVKSEEQRRLHKAFLRYHDPKGWPMLRE 656
            FYPSPMA AT +YH+  N L+ V + S+ V + K   QR+LHKA LRYHDP GWPM+RE
Sbjct: 597 NFYPSPMANATTIYHTELNSLKNVKHSSETVEVPKGGRQRKLHKALLRYHDPAGWPMIRE 656

Query: 657 ALTRMGRADLIGPGKDQLIPLHQPSTDSYQSARRKNSTPAGSHKVAKETTTKILTQHTGL 716
           AL +MG+  LIG G + L+P           A+  N TPAG   V + +  +   +  G 
Sbjct: 657 ALIKMGKEHLIGGGANCLVPAETRQERQGYRAKTAN-TPAGKKAVTRFSANQ-FDERKGN 714

Query: 717 PPRGSDGSNPWDKREQAKAAAQARNKQAAKERTDAAK------GKGGKPARKPV 764
               + G +    + Q +AA +  + + +  +  A K      G  GKP ++PV
Sbjct: 715 GQGNAQGKSQGKGKSQGQAAGKGVSGKGSTGKGSAGKSSAGKAGSRGKPGKRPV 768