Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Pseudomonas fluorescens SBW25-INTG

Subject, 261 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  128 bits (322), Expect = 2e-34
 Identities = 86/255 (33%), Positives = 138/255 (54%), Gaps = 10/255 (3%)

Query: 119 IQVLARIGR-AVDTVWQDSKQLLGFIGLILETFARGIFRPRRWRLTPM-VAHLEQVGLDA 176
           I  +AR+GR A+D+V       LG  GL+L      I R R+   TP+ +  L  +G+ +
Sbjct: 4   IDQIARLGRGAIDSVTG-----LGRAGLMLWGAIAKIPRVRKG--TPLLIKQLYVIGVQS 56

Query: 177 APIVALLTFLVGAVVAFLGATVLKSFGATIFTVDLVAFSFLREFGVLLTAILIAGRTASA 236
             I+ +    +G V+A  G  +L  FG       +VA S LRE G ++TA+L AGR  SA
Sbjct: 57  MVIILVSGLFIGMVLALQGYNILVGFGTEDSLGPMVALSLLRELGPVVTALLFAGRAGSA 116

Query: 237 FTAQIGSMKANEEIDAIRTLGLDPMELLVLPRVLALLVALPMLTFLAMLSGIVGGGVVCA 296
            TA+IG MK+ E++ ++  + +DP+  ++ PR  A +++LP+L  +    GI GG +V  
Sbjct: 117 LTAEIGLMKSTEQLSSLEMMAIDPLRQVIAPRFWAGVISLPLLALMFTAVGIYGGHLVGV 176

Query: 297 VALDISPAMFLSLLQSDIGVQHFLVG-LVKAPIFAFLIAAIGCLEGFKVSGSAESVGAHT 355
               I    F S+LQ+ +  +  +V  L+K+ +FA ++  I    G+ V  + E +   T
Sbjct: 177 EWKGIDSGSFWSILQASVEWRQDIVNCLIKSLVFAVVVTWIALYRGYHVIPNPEGISRAT 236

Query: 356 TSSVVQSIFVVIVLD 370
           T +VVQS   V+ LD
Sbjct: 237 TQTVVQSSLAVLALD 251