Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoD/SigA from Parabacteroides merdae CL09T00C40

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  219 bits (558), Expect = 1e-61
 Identities = 110/287 (38%), Positives = 192/287 (66%), Gaps = 6/287 (2%)

Query: 3   QLKITKSITNRESASLDKYLQEIGREDLITVEEEVELAQAIKRGD---RRALEKLTRANL 59
           Q+ + +S    E    D  + ++G+   + + E   + Q +++G+   R+A +++  ANL
Sbjct: 376 QMFVERSTDKIEELRAD--MAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANL 433

Query: 60  RFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALA 119
           R V+S+AK+Y N+GL   DLI EGN+GL+KA +KF+  RG+KF +YA WWIRQ+I +++A
Sbjct: 434 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 493

Query: 120 EQSRIVRLPLNQVGSLNKISKAFSKFEQENERRPSPEELADELDIPVDKISDTLKVSGRH 179
           +Q+R +R+P++ + ++NK+ +   +   E  R P+PEELA++L +P++K+   +K++   
Sbjct: 494 DQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEP 553

Query: 180 ISVDAPFVEGEDNSLLDVLVNDDAPIADRSLMNESLAKEIDRALATLTERECEIIKMFFG 239
           IS++ P  + ED+ L D + + +A +   S + E+L +   R LA+LT RE  +++M FG
Sbjct: 554 ISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFG 613

Query: 240 IGCQ-EMTLEEIGDKFGLTRERVRQIKEKAIRRLRQGTRSKLLKSYL 285
           IG   + TLEE+G +F +TRER+RQI+ KA+R+L+  +RS+ L+S+L
Sbjct: 614 IGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 660



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 21  YLQEIGREDLITVEEEVELAQAIKRGDRRALEKLTRANLRF 61
           YL+E+G  +L++ E E+ +A+ I+ G    +  L  + L F
Sbjct: 119 YLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTF 159