Pairwise Alignments

Query, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  504 bits (1297), Expect = e-147
 Identities = 309/771 (40%), Positives = 431/771 (55%), Gaps = 73/771 (9%)

Query: 24  PMPYLDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTF 83
           P   LDGLN  QR AV      +L+LAGAG+GKT+ L  RI  L++   A P  ++AVTF
Sbjct: 4   PSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTF 63

Query: 84  TNKAAREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIR 143
           TNKAA EM+ R+  ++     GM W GTFH IC ++LR H     L  +F I+D+DDQ R
Sbjct: 64  TNKAAAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122

Query: 144 LLKQLIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVSDASAYNHRGVDFYAQYQAR 203
           LLK+LIKA  +DDK+WPAR +A  I++ K+  L P+ +   D     +  +  Y  YQ  
Sbjct: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTY--LKLYTAYQEA 180

Query: 204 LKDLNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQYLWLRLLAGAH 263
                 VDF ++LL  + + + N  + E YQ  F+ I+VDE+QDTN  QY WLR++AGA 
Sbjct: 181 CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ 240

Query: 264 KNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRGN 323
            N+  VGDDDQSIYGWRGA V NI +F ++FP  N +RLEQNYRST+ IL A++ +I  N
Sbjct: 241 SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN 300

Query: 324 SGRLGKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQR--GTRGLAPVDLNNMAIL 381
           S R+GK+LWT+   GE + +   ++  +EAR++  +I+  Q   GT       L + AIL
Sbjct: 301 SERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-------LTDCAIL 353

Query: 382 VRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVNT 441
            R + Q R  E+  L   L YR+ GG RF+ER EI+DA++Y R + + +DD AFER++NT
Sbjct: 354 YRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINT 413

Query: 442 PKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQLVTDLARWGRLAG 501
           P RGLGDK  +TI+  AR  G +L + +   +    + G+   AL + V +L       G
Sbjct: 414 PPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFV-ELINALEEEG 472

Query: 502 DADTTHMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAFEN---------L 552
                H+ L +  +  SG   M+Q +K   S  R+ENL+ELV A   FE          L
Sbjct: 473 IDMPLHV-LTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTML 531

Query: 553 QGFLEHVSLIMDNDKQDA-AQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGL 611
             FL H +L     + D     V +MTLH+AKGLEFP VF+ G E+G+FPSQ S +E+G 
Sbjct: 532 TAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAG- 590

Query: 612 KGLEEERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGL 671
             LEEERRL YVG+TRA +   I++A  RR++GQ +   PSRFI ELPE  ++ +     
Sbjct: 591 -RLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEV----- 644

Query: 672 YGGGYGAAAPSGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVID 731
                                                RM+++   R  S  R S++ V +
Sbjct: 645 -------------------------------------RMKAQV-SRPTSTGRFSQTVVKE 666

Query: 732 LTATSAFMVGERVFHQKFGYGAITGIEG----DKLEVEFEKAGTKKVVARF 778
               + F +G RV H KFG G I   EG     +++V F   G K +V  +
Sbjct: 667 SFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717