Pairwise Alignments

Query, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score =  880 bits (2274), Expect = 0.0
 Identities = 477/843 (56%), Positives = 576/843 (68%), Gaps = 93/843 (11%)

Query: 15  LSARAMAARPMP----YLDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTT 70
           ++ARAMAAR       Y+ GLNP QR AVE LEGPVL+LAGAGTGKT+ LT RI H+L+T
Sbjct: 27  IAARAMAARDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILST 86

Query: 71  GTAKPNEILAVTFTNKAAREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLK 130
           G A P++ILAVTFTNKAAREMKER+  ++G AVEGMPWLGTFHSI VKLLRRHAELVGL+
Sbjct: 87  GRAYPSQILAVTFTNKAAREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRRHAELVGLR 146

Query: 131 SNFTILDADDQIRLLKQLIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVSDASAY- 189
           S+FTILD DD +RL+KQLI+AEG+DDKRWPA+  AG+ID WKN+ L PS++P  DA A+ 
Sbjct: 147 SDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIPEGDARAFA 206

Query: 190 NHRGVDFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTN 249
           N +G + YA YQ RL  LNA DFGDLLLH + +F+ NPDVL++Y   FR+I+VDEYQDTN
Sbjct: 207 NGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYILVDEYQDTN 266

Query: 250 VAQYLWLRLLAGAHK--------------------------------------------- 264
            AQY+WLRLLA   +                                             
Sbjct: 267 TAQYMWLRLLAQQTQASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQP 326

Query: 265 --NICCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRG 322
             NICCVGDDDQSIYGWRGAEV NILRFEKDFPGA V++LE+NYRSTEHIL AA+ +I  
Sbjct: 327 TVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAH 386

Query: 323 NSGRLGKELWTEARG--GEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGLAPVDLNNMAI 380
           N GRLGK L+TE      EKV +   WD EEEAR IGEEIE +QR        +LN+++I
Sbjct: 387 NEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEARAIGEEIEQLQRKKH-----NLNDISI 441

Query: 381 LVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVN 440
           LVRAS QMR FEDRF+T+GL YRVIGGPRFYERLEIRDAMAYFR V  P DDLAFERIVN
Sbjct: 442 LVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVN 501

Query: 441 TPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQLVTDLARWGRLA 500
           TPKRGLG+   +T+   AR+  + ++  A   VE+ ++K K  K L  +V D  RW  L 
Sbjct: 502 TPKRGLGETTVRTLHDYARARDIPMLAAASDIVETDELKPKARKGLFDVVADFRRWQTLL 561

Query: 501 GDADTTHMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAFENLQGFLEHVS 560
               T H ELAE ILDESGYT MWQADK+ ++PGRLENLKEL++++EAFE+++GFLEHV+
Sbjct: 562 --ETTPHTELAERILDESGYTAMWQADKSAEAPGRLENLKELIRSMEAFESMRGFLEHVA 619

Query: 561 LIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLKGLEEERRL 620
           L+MD ++ +    VSIMTLH+AKGLEF  VFLPGWE+GLFP QR++DE G  GLEEERRL
Sbjct: 620 LVMDAEQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRL 679

Query: 621 AYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGYGAAA 680
           AYVGITRA+  C I F  NRR+ G WQS LPSRF+DELP  +VEV      YGG      
Sbjct: 680 AYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSRFLDELPIAHVEVAEQEVSYGG------ 733

Query: 681 PSGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGER------------------GLSQP 722
             G GG  +S  +      + Y +PGWKR Q    E                   G S P
Sbjct: 734 -YGRGGYGQSRFDKADPFENNYQTPGWKRAQQHRSEATRDNWGTRSGHAIERIGYGESGP 792

Query: 723 RESKSSVIDLTATSA------FMVGERVFHQKFGYGAITGIEGDKLEVEFEKAGTKKVVA 776
           R +++   +L A S       F VG+RVFH KFG G I  IEG+KL ++F++AG K+V+ 
Sbjct: 793 R-TRTIEGELVAKSTSAEPSRFNVGDRVFHIKFGNGNIAAIEGNKLTIDFDRAGQKRVLD 851

Query: 777 RFV 779
            FV
Sbjct: 852 GFV 854