Pairwise Alignments

Query, 359 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Phaeobacter inhibens DSM 17395

Subject, 244 a.a., amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 192 PESYRCVNFLFSDPMFETLMLLFVDKSRPFTFESDADIEGKTLCRPAGYLTFDLDGYGRR 251
           PE    VNF  S+P +E   +L V+K        D DI+ K      G  T D       
Sbjct: 99  PERQASVNF--SEPYYEATQVLLVNKDNESIHTLD-DIKDKHFAVQLGS-TAD------- 147

Query: 252 WMEEKKITLKQP--HKVADCFEMVAKGEADAVAINEFTGRSVMKENDLLDQFEVLPLPLS 309
            M  KK T K    +   +    +  G+ D V  +     + + +N  L   + L  P  
Sbjct: 148 -MMSKKYTQKVTAFNTGFEAIMELKNGKVDLVLFDSEPAANYLAKNPDLKLIK-LDFPPE 205

Query: 310 VLGIHVVVHKTHPQADEMLAMINTGLRNIRENGRYQAIIEDHM 352
             G  V       Q  E+L  IN  L+N++ENG+YQA++  H+
Sbjct: 206 FYGFAV-----SKQQPELLNSINHTLKNLKENGQYQALVSAHI 243