Pairwise Alignments

Query, 373 a.a., DNA polymerase III, gamma/tau subunits from Phaeobacter inhibens DSM 17395

Subject, 374 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  223 bits (568), Expect = 7e-63
 Identities = 149/359 (41%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 11  DQTAGAPHPRETLHLFGQAQAEQDFLTAFNSDRLHHGWLLTGPQGVGKATLAWRIAAFLL 70
           D+ AG P PR T  L G   AE++ L    S R  H WL++GP+G+GKATLA+R A F L
Sbjct: 7   DEAAGDPGPRLTADLLGHEAAEREILETCASGRAAHAWLISGPRGIGKATLAFRFARFAL 66

Query: 71  SQP-PAEDAGLFGAPPPATSLDIGMDHPVMHRIQALAEPGLASITRSVNDK--GKLRDQI 127
           +      + GLFGA  PA SL +   HPV  R+ A +   L  I R + +   G+ R +I
Sbjct: 67  AGGLEGGEGGLFGALAPA-SLAMDPAHPVFRRVAAGSHGDLRVIERGLAEGTGGRRRGEI 125

Query: 128 VVDDIRALNKFFGLSATDGGRRVVIVDAADEMNTSAANALLKMLEEPPARTTLLLVSHQP 187
           V+ D+R L  F  ++ ++GG RVVIVD A++MN +AANALLK LEEPP R  LLLVSH P
Sbjct: 126 VIGDVRDLGGFMRMTPSEGGWRVVIVDGAEDMNRNAANALLKGLEEPPGRALLLLVSHNP 185

Query: 188 SRLLPTIRSRCRLLRFAPLSPEDMQAALTQAGAELPR-QAEHLAALANGSVGAALRLLNL 246
           +RLLPTIRSRCR L   PL P  +   + ++  EL   +   L  LA GS+G A+ L  +
Sbjct: 186 ARLLPTIRSRCRRLALRPLEPAVLATLIERSLPELAETERPGLIGLAEGSIGRAMDLAAM 245

Query: 247 GGLQAYSDVVRLLDSMPRLDRQRAMTLAEQAAARGGADKFELLLTLIDTALARLARTGA- 305
           GGL    +++ LL + P  D  R    A+QAA    A  F     L    LAR+ R GA 
Sbjct: 246 GGLALCREMIGLLATAPAFDVARLHGFADQAARDDRA--FTATAGLFPWWLARMIRRGAV 303

Query: 306 ---TGMAPQPEAAPQEAAVLSRLSPTPQKARAWADLAAQVTARMRHGQAVNLDPAALVL 361
               G A +    P E+A   RL       R W ++  +VT      +AV+LD    VL
Sbjct: 304 AGSAGTAEEMWTIPGESAASGRLLAAATLDR-WVEVWEKVTTLFARAEAVHLDRKQTVL 361