Pairwise Alignments

Query, 387 a.a., carbamoyl-phosphate synthase small chain from Phaeobacter inhibens DSM 17395

Subject, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis JJ

 Score =  263 bits (672), Expect = 6e-75
 Identities = 156/374 (41%), Positives = 215/374 (57%), Gaps = 30/374 (8%)

Query: 13  LALADGTIFYGNGFGAYGETVAELCFNTAMTGYQEIMTDPSYAGQIVTFTFPHIGNTGVT 72
           L L DGTI  G GFGA  E + EL FNT+MTGY EI+TDPSY GQI+T T+P  GN GV 
Sbjct: 5   LVLEDGTIIRGEGFGAESEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGVE 64

Query: 73  PEDDETADPVAAGMVVKWDPTLASNWRATEELKDWLTRTNRIAIGGIDTRRLTRAIRQLG 132
            E  E+    A G VVK D T        +EL ++L   N   I G+DTR +TR IR  G
Sbjct: 65  KEWFESDGIKAEGFVVK-DIT-------GKELDEFLKEYNIPGISGVDTRYITRKIRSKG 116

Query: 133 APHVAL--AHDPDGNFDIEALVAKAREWSGLEGLDLAKDVTCSQSYRWDEMRWAWPEGYT 190
                L  + +P    +   L+ K  ++  +  +DL  +V+  ++  +            
Sbjct: 117 VIRSLLKTSTNPISKDEETELIKKVVDYPDISEIDLVPEVSTKETVEYSA---------- 166

Query: 191 RQEAPKHKVVAIDYGAKRNILRCLASAGCDVTVLPASATAEEVLAHSPDGVFLSNGPGDP 250
             E  K + V ID G K++I+ CL   GC V  +P ++  EE+++++PD V +SNGPGDP
Sbjct: 167 --EDEKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKEEEIISYNPDFVLVSNGPGDP 224

Query: 251 AATGEYAVPMIQQILDTTDLPMFGICLGHQMLALALGGKTVKMNHGHHGANHPVKENATG 310
               E  V  ++ ++ T  LP+ GICLGHQ++ +ALGGKT K+  GH G N PVK+  +G
Sbjct: 225 ENMTE-TVDTVKNLIGT--LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVESG 281

Query: 311 KVEITSMNHGFAVDGQSLPDGVEETHVSLFDGSNCGIRISD-----RPVYSVQHHPEASP 365
           KV ITS NHGFA D + +P G E  H++L D +  GIR  +       V+SVQ+HPEA P
Sbjct: 282 KVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKIESSDLKNTVWSVQYHPEAGP 341

Query: 366 GPQDSFYLFERFAE 379
           GP D+ +LF+   E
Sbjct: 342 GPHDARFLFDEMVE 355