Pairwise Alignments

Query, 185 a.a., 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' from Phaeobacter inhibens DSM 17395

Subject, 167 a.a., RNA polymerase subunit sigma from Pedobacter sp. GW460-11-11-14-LB5

 Score = 70.5 bits (171), Expect = 1e-17
 Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 13  MSPDQFKSEMIGLLPRLRRFALSLTRSGADADDLLQEACALALQKWQQYDPAQPLDRWMF 72
           M    F + +     +L   A++ TR   DA+DL+Q+    AL+  + ++       W+F
Sbjct: 1   MKTATFSNMVTAHTDQLYAHAMNFTRDTEDANDLVQDTLIKALRFKEGFEQGSNFKGWLF 60

Query: 73  RVLRNLWVSEIRKRRVRQGAGVVPVEEATELAASGVSGADVAETTLTARQVQSRIADMDP 132
            ++RN ++++ RK + ++ + +   EE +    +G +  + AE     + + + +  +  
Sbjct: 61  VIMRNTFINDYRK-KAKKNSIITIEEELSSAQLAGNASLNGAEHKFAMQDINNALHRLPE 119

Query: 133 ALAQPLLLVCAEGYSYREVSELLDVPIGTVMSRIHRARKLLISSL 177
           A   P +    EGY Y E+++ L +P+GTV + IH+AR  L  +L
Sbjct: 120 AHRLPFVRY-VEGYKYHEIADELGIPLGTVKTHIHQARLELKKTL 163