Pairwise Alignments

Query, 313 a.a., transcriptional regulator, LysR family from Phaeobacter inhibens DSM 17395

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  143 bits (361), Expect = 4e-39
 Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 10/296 (3%)

Query: 13  MSRRHYDLPPLTTLAAFETAARHLSFKNAAQELSVTPGAVSHQIKALEGELGVALFQRKH 72
           MSRR   LPPL  + AFE AARHLSF  AA+EL VT  AVSHQIKALE  LG+ LF+RK+
Sbjct: 1   MSRR---LPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKN 57

Query: 73  RGVELTREGQGLYESLATSFRQISRQLSKTRQMGEEDAVTVGSTTAVAALWLSPMIIQFW 132
           R + LT EGQG +  +   F Q++    +        ++TV ++ + A  WL P +  F 
Sbjct: 58  RSLLLTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFS 117

Query: 133 REYPDLNIH-QITQDRPFHDTREFDFFIRYGRDRDAALAHTAIYRDQLVPVARPDLAAGL 191
              PD+++  +   D     T + D  I YG      L    +  + L+PV  P L +G 
Sbjct: 118 ENNPDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGP 177

Query: 192 DGASL-QEIAQQRLIHLQSASQSWTTWADWFHELG-HKGDIAAGTRVTSYSVALQIARKG 249
              S   ++    L+H      S   W  WF + G +  ++  G   +  S+ LQ A  G
Sbjct: 178 KPLSQPSDLKHHTLLH----DSSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHG 233

Query: 250 AGVALGWRRLIQPMLDSGKLAIVGCHSVPAPREFYLVGLPDDELSPNALKLKQWIL 305
            GVALG+  L +P + +G+L       + +   +YLV   +       +  ++W+L
Sbjct: 234 QGVALGYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289