Pairwise Alignments

Query, 325 a.a., DNA topoisomerase 1B-like protein from Phaeobacter inhibens DSM 17395

Subject, 339 a.a., Topoisomerase IB from Sphingomonas koreensis DSMZ 15582

 Score =  265 bits (677), Expect = 1e-75
 Identities = 145/321 (45%), Positives = 187/321 (58%), Gaps = 1/321 (0%)

Query: 3   LVYYTDDQPGITRRRRGRGFSYYMPDGSHIGDATERARLNGLGVPPAYTDVWLCPLTNGH 62
           L Y  D +PGITRR+  +G+ Y+  DG  I +  E  RLN +G+PPAYTD W CP  NGH
Sbjct: 5   LRYCDDSRPGITRRKLSQGWGYWDTDGHRITNRDEIDRLNAVGLPPAYTDAWYCPHPNGH 64

Query: 63  LQATGRDARDRKQYRYHPEWQAHRAEQKFAQLGTFGERLPVLRRWISDRLTGPVGDEDTA 122
           LQATG DAR RKQYRYHPE++A +   K+ +   FG  LP LR  I   L      ++ A
Sbjct: 65  LQATGIDARGRKQYRYHPEFRAAQEAAKYDRCAAFGHLLPGLRARIEADLRKRSLSKERA 124

Query: 123 IAAVLALLDRGSLRIGNPSYTEENGSYGATTLRPRHVAFSGQMIQLRYTAKGGQTVEKSL 182
           +AAV+ LLDRG +R+GN  Y + N S+GATTLR RH   +G  ++L+Y AK G+    +L
Sbjct: 125 VAAVVRLLDRGHVRVGNEGYAKANKSFGATTLRKRHAKLNGTSLKLQYRAKSGKLRTLTL 184

Query: 183 RGPALQRILERSQDLAGPELISWVDADGNAHAVRSEQVQEVLSKLCGDGVSAKTLRTWNG 242
              +L+  ++R QDL G  L  W+D  G AH V S  V + +    GD  +AK  RTW  
Sbjct: 185 TDTSLRSFVKRCQDLPGQHLFGWLDGAGEAHPVTSTDVNDYIRDAMGDDFTAKHFRTWGA 244

Query: 243 SHAAFTVALDAPT-LTITAMAEAAAERLHNTPTIARNSYIHPQIIALAELPDPQRAARLS 301
           S  AF   +DA   + +  M E   E L NTP IAR SY+HPQ+I LA+  D QRA R +
Sbjct: 245 SVIAFEALVDAEAPIGLNTMLEPVTEALGNTPAIARKSYVHPQLIELAKDRDAQRAFRDA 304

Query: 302 ALPQRQISGLRLGEDRLIDFL 322
               R    L   E  LI FL
Sbjct: 305 LTLPRATRHLSRAERGLIAFL 325