Pairwise Alignments

Query, 444 a.a., putative multi antimicrobial extrusion protein from Phaeobacter inhibens DSM 17395

Subject, 452 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N1B4

 Score =  113 bits (282), Expect = 1e-29
 Identities = 106/435 (24%), Positives = 183/435 (42%), Gaps = 18/435 (4%)

Query: 3   QKNLTQGAVWRALAAVSAPMSLGILGVLSVGLADAYFLGQ-LGEAPLAAVGFIYPVTTAV 61
           Q   TQ  +W+      APM L        G  ++ ++GQ LG   LAAV  ++PV    
Sbjct: 2   QTPTTQHPLWQTYLLFLAPMVLSNFLQSMSGTINSIYIGQMLGTQSLAAVSGMFPVVFFF 61

Query: 62  TSLSIGLSAGANAAISQSLGRGDSAIETNRLSVHAIVLGTLVATLVALVFYLGAGALFSV 121
            +L IGL AGA   I Q+ G  +  +    ++   ++LG ++  + A++  + A      
Sbjct: 62  IALVIGLGAGAGVLIGQAWGARELHL-VKAIAGSTLLLGAMIGLVAAVLGSVFARPALQG 120

Query: 122 MGAKDDVLAEAQSYAPFWALSFPFLVGMALLNAVFRAHGDGATSAVIMMVAAALNIALDP 181
           +G   DVL +A +YA       P L+   L   + R   D  +  + ++V+  + +AL P
Sbjct: 121 LGTPVDVLDDAVAYAHVMMWILPSLLVFVLFTQLLRGVSDTVSPLLALVVSTCVGLALTP 180

Query: 182 VLIYGLGPVPEMSTAGAALATALARVLTLIGAFGYALRTGVIRPP--EVFT------DGI 233
            LI G   +P M    AA A     +  ++      +R G    P  E+F       D +
Sbjct: 181 ALILGWLGLPPMGIQSAAWAGLAGNLAAMVWLAWRLIRKGHPLAPDREMFASMRLDMDIL 240

Query: 234 GGSVREVIRVGLPAAFSNAINPAGMAMVTAAAATLGDTVVAGLGAAQRVQSVALVPLLAL 293
           G    +V+R+GLP      +      ++ A     G    A  GA  ++ +    P L++
Sbjct: 241 G----KVLRIGLPTGLQMVVLSLSELVILALVNQHGSQATAAYGAVTQIVNYVQFPALSI 296

Query: 294 SAGIGPVVGQNWGAD--QQMRARLAVWQSWQFCIGYGLAMALVLTLFASDIAGLLTSDQG 351
           +     +  Q  GA   ++M   L        C+  GL   ++  L +  + GL  +D  
Sbjct: 297 AITASILGAQAIGAGRIERMGPILRTGLLINVCLTGGL--VVLGYLLSHWLLGLFLTDDS 354

Query: 352 AAATTAQYLRIVSWSFLGYGVLVTANAAMNARSKAVWSMGLSLMRIFAIYVPLAWLGVWI 411
             A     L I+ WS L +G        M A    +  + ++++ +  + +P+A+L    
Sbjct: 355 TRAMAEHLLHIMLWSLLVFGFQAIVGGIMRASGTVLVPVVVTIVCVVGVQLPVAYLLDAR 414

Query: 412 FGYAGILGAAVIANL 426
           FG  G+  A  +A L
Sbjct: 415 FGLQGVWMAFPVAYL 429



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 38/171 (22%), Positives = 61/171 (35%), Gaps = 13/171 (7%)

Query: 268 LGDTVVAGLGAAQRVQSVALVPLLALSAGIGPVVGQNWGADQQMRARLAVWQSWQFCIGY 327
           LG   +A +     V    +  ++ L AG G ++GQ WGA +    +     +       
Sbjct: 43  LGTQSLAAVSGMFPVVFFFIALVIGLGAGAGVLIGQAWGARELHLVKAIAGSTLLLGAMI 102

Query: 328 GLAMALVLTLFASDIAGLLTSDQGAAATTAQYLRIVSWSFLGYGVLVTANAAMNARSKAV 387
           GL  A++ ++FA      L +          Y  ++ W      V V     +   S  V
Sbjct: 103 GLVAAVLGSVFARPALQGLGTPVDVLDDAVAYAHVMMWILPSLLVFVLFTQLLRGVSDTV 162

Query: 388 WSM---------GLSLMRIFAIYVPLAWLGVWIFGYAGILGAAVIANLAAV 429
             +         GL+L         L WLG+   G      A +  NLAA+
Sbjct: 163 SPLLALVVSTCVGLALTPALI----LGWLGLPPMGIQSAAWAGLAGNLAAM 209