Pairwise Alignments

Query, 444 a.a., putative multi antimicrobial extrusion protein from Phaeobacter inhibens DSM 17395

Subject, 491 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Xanthomonas campestris pv. campestris strain 8004

 Score =  122 bits (305), Expect = 3e-32
 Identities = 108/410 (26%), Positives = 176/410 (42%), Gaps = 15/410 (3%)

Query: 6   LTQGAVWRALAAVSAPMSLGILGVLSVGLADAYFLGQ-LGEAPLAAVGFIYPVTTAVTSL 64
           LT+G + + L   + P+  G +     G  +A ++G+ LGEA L A      +   +   
Sbjct: 7   LTEGPIGKNLLLFALPILAGNIAQSLNGSINAIWIGRYLGEAALTAAANANSIMFFLIGS 66

Query: 65  SIGLSAGANAAISQSLGRGDSAIETNRLSVHAIVLGTLVATLVALVFYLGAGALFSVMGA 124
             G+   A   I Q++G  D A     +   A   G L A L+A+  +  A  L + MG 
Sbjct: 67  VFGIGMAATILIGQAMGARDIAQARKVMGTSATFFGGLSA-LIAVAGWWLAPHLLAAMGT 125

Query: 125 KDDVLAEAQSYAPFWALSFPFLVGMALLNAVFRAHGDGATSAVIMMVAAALNIALDPVLI 184
               LA A+ Y     ++ P +   A L+A  R  GD  T    ++++  L+I  +P+LI
Sbjct: 126 PPASLALAEDYLRVIFVAMPTIYLFAFLSAALRGTGDARTPFRFLLLSVVLDIVFNPLLI 185

Query: 185 YGLGPVPEMSTAGAALATALARVLTLIGAFGYALRTGVI-----RPPEVFTDGIGGSVRE 239
           +G+GP P++  AGAA AT LA+ + L G   Y    G +     R   +F       +R 
Sbjct: 186 FGVGPFPQLGIAGAAWATVLAQSVALAGLLLYLRSRGHVLWLGRRDLALFRID-PAILRA 244

Query: 240 VIRVGLPAAFSNAINPAGMAMVTAAAATLGDTVVAGLGAAQRVQSVALVPLLALSAGIGP 299
           ++  G+P      +    M  +       G    A  GAA ++ +   +P +AL A    
Sbjct: 245 LVGKGVPMGLQMVLISLAMIAMLTLVNGFGTDTAAAYGAALQLWNYVQMPAMALGAACST 304

Query: 300 VVGQNWGADQQMR----ARLAVWQSWQFCIGYGLAMALVLTLFASDIAGLLTSDQGAAAT 355
           +  QN GA    R    AR  V  ++   +  GL +A ++      +A  L SD  A   
Sbjct: 305 MAAQNVGAGLWARVDATARTGVAANF---LMTGLLIAPLILFDRWTLALFLPSDSPALEI 361

Query: 356 TAQYLRIVSWSFLGYGVLVTANAAMNARSKAVWSMGLSLMRIFAIYVPLA 405
                 I  WSFL +GV    +  + A    +  + +    ++ + VPLA
Sbjct: 362 ARHLNHISIWSFLLFGVTFVVSGVVRATGAVIPPLLILAFALWGVRVPLA 411