Pairwise Alignments

Query, 337 a.a., Predicted exonuclease of the beta-lactamase fold involved in RNA processing from Phaeobacter inhibens DSM 17395

Subject, 339 a.a., putative exonuclease, DNA ligase-associated from Sphingomonas koreensis DSMZ 15582

 Score =  377 bits (968), Expect = e-109
 Identities = 183/330 (55%), Positives = 230/330 (69%), Gaps = 4/330 (1%)

Query: 11  LHPQPDGLYCPAGDFYIDPIRPVPRAMITHGHADHARAGHGTVWASPQTLDIMAIRYGED 70
           + P   GLY    D +IDP +PV RA++THGHADHAR+GHG V+A+P+TL IM++RYG D
Sbjct: 10  VEPHSHGLYVRPADLWIDPSQPVERAVVTHGHADHARSGHGAVFATPETLAIMSLRYGVD 69

Query: 71  FCATRIAV---EGSTEVDGIGVRFTPAGHVLGSCQITVDDNSTAITVSGDYARVDNPACA 127
             A   A    +   E  G+   F PAGHVLGS QI +D     I V+GDY R  +P CA
Sbjct: 70  AGAAHNAAFSYQDGFERGGVRFTFHPAGHVLGSAQIAMDYAGERIVVTGDYKRRPDPTCA 129

Query: 128 SFQLAPCDVFVTEATFGLPVFNHPTPHSEIEKLLRSVAAQPERCHLVGAYALGKAQRVIA 187
            F++ PCD+ VTEATFGLPVF HP    E+ KL+ +V A+PERC LVGAYALGKAQRVIA
Sbjct: 130 PFEVVPCDILVTEATFGLPVFRHPPTADEVGKLIAAVRAEPERCVLVGAYALGKAQRVIA 189

Query: 188 LLRQAGWDQPIYIHGALQRLCDYHIAQGVDLGELRPATTKEGKAAFKGQIILGPPSAFAA 247
            LR  GW  PIYIHGAL+R+C  +   GV+LG+LR   ++  K A +GQI+L PP+A   
Sbjct: 190 ELRAGGWALPIYIHGALERMCALYTEHGVELGDLR-LVSETAKDAMRGQIVLAPPAALND 248

Query: 248 TWAQRFPDPVICFASGWMQVRARARQRGVELPLILSDHVDWPDLTRTIRDLNPKQVWVTH 307
            W++R PDP+   ASGWM+VR RARQR VELPL++SDH DW +LT TI ++NPK+ W+TH
Sbjct: 249 RWSRRLPDPITAMASGWMRVRQRARQRMVELPLVISDHADWDELTTTIAEVNPKESWITH 308

Query: 308 GREDALVRWCELNQITGRPLRLVGYEEEAE 337
           G E+ L+RWC LNQ   R L LVG + E E
Sbjct: 309 GSEEGLLRWCALNQRKARALHLVGRDLEEE 338