Pairwise Alignments

Query, 518 a.a., putative ATP dependent DNA ligase from Phaeobacter inhibens DSM 17395

Subject, 878 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score = 69.7 bits (169), Expect = 4e-16
 Identities = 89/332 (26%), Positives = 139/332 (41%), Gaps = 38/332 (11%)

Query: 192 LAAAPFRPVMLSTGTDLEDLASLSP-ADFIAEWKWDGIRVQAVNDKGTRRLYSRTGEDIS 250
           L+ A   P+  +   +L  L   +P  +++ E K+DG RV A  + G  RL +R G D +
Sbjct: 221 LSGAVAGPLPDTLKPELATLVESAPDGEWLYEIKFDGYRVMARIENGDVRLLTRNGHDWT 280

Query: 251 GSFPDVIEALNFDGV----LDGELLVKRGDSVAPFGDLQKRLGRKKVGKAMLASHPAALR 306
              P   EAL   G+    LDGE++V     V  F  LQ        GK        A  
Sbjct: 281 HKLPSQAEALAALGLESAWLDGEMVVANDQGVPDFQALQNAFEAGSSGK-------IAYY 333

Query: 307 VYDVLYWNGEDLRPRTLADRQIHLKTCVCDLRDPRIDLSLPLDFETWEDLAKLRADPPNS 366
           ++DV Y NG DLR   + +R+  L   +     P +  S   +    E+   L       
Sbjct: 334 LFDVPYLNGMDLRNVPVQERRAALAAVLESNESPLLRFSDAFE----ENPEALLNSACQM 389

Query: 367 VIEGVMIKRRDSAYIAGRKRGYWFKWKRDPMLVDAVMLYAQRGHGKRSGYYSDFTFGVWN 426
            +EG++ KR  S Y++ R+   W K K        V+ +++   G RS  +     G+ +
Sbjct: 390 QMEGLIGKRIGSTYVS-RRSNDWIKLKCKNRQEFVVVGFSE-PKGARSA-FGALLLGLHD 446

Query: 427 DD--QLVPVGKAYFGFTDAELKELDR-----------FVRNNTIDRFGPVRAVKPELVLE 473
            D  QL   GK   GF +  LK + +            V   T      V  ++P+L+ E
Sbjct: 447 ADSGQLRYAGKVGTGFNETTLKSIYQQLLPLETKKAAVVNPPTGYEAKGVHWLEPKLLAE 506

Query: 474 VAFEGLNESSRHKSGLAMRFPRINRIRTDKPA 505
           VAF  + +        ++R    + +R DKPA
Sbjct: 507 VAFAEMTKDG------SVRHAVFHGLRDDKPA 532