Pairwise Alignments

Query, 518 a.a., putative ATP dependent DNA ligase from Phaeobacter inhibens DSM 17395

Subject, 534 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Xanthomonas campestris pv. campestris strain 8004

 Score =  337 bits (863), Expect = 8e-97
 Identities = 217/535 (40%), Positives = 300/535 (56%), Gaps = 23/535 (4%)

Query: 1   MQAFAELLEQLAFTPSRNGKIAHLTTAFATIPDPERGYALAAITG----DLALRNVTPSL 56
           ++ FA L   L  +     K A L   F   P  +  +AL  + G       +R      
Sbjct: 1   VKRFAALYRTLDRSTGTLDKRAALVAYFRAAPPLDAAWALYLLAGGKVASARMRIAASGE 60

Query: 57  LRGLVAEETDPE--LFRLSYDFVGDLAETVALIW--PHSDTVIDLSLTDAVHE----LTN 108
           LR  +AE       L   SYD VGDLAET+AL+   P S+ V D+SL + + +    + N
Sbjct: 61  LREWIAEAAGIADWLVADSYDHVGDLAETLALLLDDPASEAV-DVSLAEWIEQRLLPIAN 119

Query: 109 TAKAQLPALIARRLSQMTPTQRYAYLKLATGGLRVGVSARLARSALAQFGDVDVTEIEEL 168
              A     I +    +   +R  + KL TG LRVGVS RL + ALA+   VD+  I + 
Sbjct: 120 QDVAVRKHCIVQAWRTLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGVDIARIAQR 179

Query: 169 WHGLTPPYLPLFAWLEGGEKPVNLAAAPFRPVMLSTG--TDLEDLASLSPADFIAEWKWD 226
             G   P+    A L   E        P+ P  L++    D+E L ++   D++ EWKWD
Sbjct: 180 MLGSWRPHATYVADLLTHEALPGDRQQPY-PFFLASPLEADVESLGAID--DWLLEWKWD 236

Query: 227 GIRVQAVNDKGTRRLYSRTGEDISGSFPDVIEA---LNFDGVLDGELLVKRGDSVAP--F 281
           GIR+Q +   G   L+SR  E + G FP++ +A   L    V+DGELL  + + + P  F
Sbjct: 237 GIRLQLLRRAGEAALWSRGEERLDGRFPEIEQAAMGLPDGTVIDGELLAWQPEQLLPMPF 296

Query: 282 GDLQKRLGRKKVGKAMLASHPAALRVYDVLYWNGEDLRPRTLADRQIHLKTCVCDLRDPR 341
             LQ R+ R K G   LA+ PA +  YD+L  +GEDLR R L  R+  L+  +  L DPR
Sbjct: 297 TALQTRIQRLKPGPKTLAAAPARVVAYDLLELDGEDLRERPLHARRALLERVLATLADPR 356

Query: 342 IDLSLPLDFETWEDLAKLRADPPNSVIEGVMIKRRDSAYIAGRKRGYWFKWKRDPMLVDA 401
           I  S  +    W+  A++R D     +EG+M+KR  S Y +GR+RG W+KWK DP+ +DA
Sbjct: 357 IIASPLVHSTDWQAAAQVRLDARARGVEGLMLKRARSPYQSGRRRGDWWKWKIDPLTIDA 416

Query: 402 VMLYAQRGHGKRSGYYSDFTFGVWNDDQLVPVGKAYFGFTDAELKELDRFVRNNTIDRFG 461
           V+LYAQ GHG+RS  Y+D+TFG+W+D  LVP+ KAY G  D E+ +LDR++R NT +RFG
Sbjct: 417 VLLYAQAGHGRRSTLYTDYTFGLWHDGALVPIAKAYSGLDDTEILQLDRWIRANTTERFG 476

Query: 462 PVRAVKPELVLEVAFEGLNESSRHKSGLAMRFPRINRIRTDKPALEAGTLAELRA 516
           PVRAV P  V E+ FEG+N S+RHKSG+A+RFPRI R R DKP  EA  L+ L+A
Sbjct: 477 PVRAVTPHHVFELGFEGVNRSTRHKSGIAVRFPRILRWRHDKPFAEADHLSSLQA 531