Pairwise Alignments

Query, 518 a.a., putative ATP dependent DNA ligase from Phaeobacter inhibens DSM 17395

Subject, 1001 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 86/304 (28%), Positives = 125/304 (41%), Gaps = 37/304 (12%)

Query: 222 EWKWDGIRVQAVNDKGTRRLYSRTGEDISGSFPDVIEALNF----DGVLDGELLVKRGDS 277
           E KWDG R+      G  +L SR  +  + SFP+V  A+      D  LDGEL+V     
Sbjct: 265 EIKWDGYRLLTDLVDGRAQLRSRNDQAWTDSFPEVATAVQALPVRDARLDGELVVLDAQG 324

Query: 278 VAPFGDLQKRLGRKKVGKAMLASHPAALRVYDVLYWNGEDLRPRTLADRQIHLKTCVCDL 337
            + F  LQ+ +          A  P    V+D+L   G DLR   L +R+  L+  + + 
Sbjct: 325 RSDFSALQRAIDG-------TARQPLRYLVFDLLGVAGVDLRATPLLERKQLLRALLGET 377

Query: 338 RDPRIDLSLPLDFETWEDLAKLRADPPNSVIEGVMIKRRDSAYIAGRKRGYWFKWKRDPM 397
                  +L           ++ A   +   EG++ KR D+ Y  GR    W K K +  
Sbjct: 378 PG-----TLAYSAHVIGRGPEVFAASADKGWEGIVSKRADAPYRGGRSAD-WVKTKHEDS 431

Query: 398 LVDAVMLYAQRGHGKRSGYYSDFTFGVWNDDQLVPVGKAYFGFTDAELKELDRFVR---- 453
               V+ Y     G RSG +        +  QL  VG+   GF  A L E+   ++    
Sbjct: 432 DEFVVVGYTD-PKGARSG-FGALLLAQLDGTQLRYVGRVGTGFDSALLGEITAQLQALHS 489

Query: 454 -NNTID-------RFGPVRAVKPELVLEVAFEGLNESSRHKSGLAMRFPRINRIRTDKPA 505
              T++       R   V  V+P L+ EVAF G       K GL +R     R+R DKP 
Sbjct: 490 PQPTLELPAHIPSRPRDVHWVRPVLIAEVAFRGW-----AKQGL-LRQAAFKRLREDKPM 543

Query: 506 LEAG 509
            + G
Sbjct: 544 SDLG 547