Pairwise Alignments

Query, 518 a.a., putative ATP dependent DNA ligase from Phaeobacter inhibens DSM 17395

Subject, 561 a.a., ATP-dependent DNA ligase from Herbaspirillum seropedicae SmR1

 Score =  300 bits (768), Expect = 9e-86
 Identities = 204/549 (37%), Positives = 294/549 (53%), Gaps = 34/549 (6%)

Query: 1   MQAFAELLEQLAFTPSRNGKIAHLTTAFATIPDPERGYALAAITGDLALRNVTPSLLRGL 60
           M+ F+ L  +L  T S   K+A L   F      +  +A+  + G    + V  SLL+  
Sbjct: 7   MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 66

Query: 61  VAE--ETDPELFRLSYDFVGDLAETVALIWPHSDTVIDLSLTDAVHE----LTNTAKAQL 114
             E  + D  LF   Y  VGDLAET+A I P +     L L   V E    L   A   +
Sbjct: 67  AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWVEERIAPLRGAAPETI 126

Query: 115 PALIARRLSQMTPTQRYAYLKLATGGLRVGVSARLARSALAQFGDVDVTEIEELWHGLTP 174
            A + +   ++    R+   KL  GG RVGVS  L   ALA    +D   + +   G T 
Sbjct: 127 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 186

Query: 175 P--------YLPLFAWLEGGEKPVNLAAAPFRPVMLSTGTDLEDLASLSPAD-FIAEWKW 225
                    +  L A  +  ++P+     P+ P  L+    ++  A+L P   +  EWK+
Sbjct: 187 GRARPDAERFARLIAPADSADQPLQ-GGQPY-PFFLAHPL-MDAPATLGPIQQWQVEWKY 243

Query: 226 DGIRVQAVNDKGTRRLYSRTGEDISGSFPDVIEALNFDG-VLDGELLVKRGDS------V 278
           DGIR Q V   G   L+SR  E I+  FP++      DG V+DGE++++  D+      V
Sbjct: 244 DGIRAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERV 303

Query: 279 APFGDLQKRLGRKKVGKAMLASHPAALRVYDVLYWNGEDLRPRTLADRQIHLKTCVCDLR 338
           APF +LQKR+GRK +   +LA  PA L  YD+L  +G DLR    ++R+  L+  V    
Sbjct: 304 APFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQSERRRRLEALVGSHP 363

Query: 339 DPRIDLSLPLDFETWEDLAKLRADPPNSVIEGVMIKRRDSAYIAGRKR--GYWFKWKRDP 396
              + L+  L  + W+ LA+LRA      +EG+M+K  D+ Y  GR R  G W+KWK DP
Sbjct: 364 AAALMLAPTLTAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDP 423

Query: 397 MLVDAVMLYAQRGHGKRSGYYSDFTFGVWNDD-------QLVPVGKAYFGFTDAELKELD 449
             +DAV++YAQ GHG+R+  Y+D+TF +W+         +LVP  KAY G TDAE+  +D
Sbjct: 424 YSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVD 483

Query: 450 RFVRNNTIDRFGPVRAVKPELVLEVAFEGLNESSRHKSGLAMRFPRINRIRTDKPALEAG 509
           + +R +TI++FGPVR+V+P +V E+ FEG+  SSRHK+G+A+RFPRI R R DK   +A 
Sbjct: 484 QVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQAD 543

Query: 510 TLAELRAFL 518
           TLA LRA L
Sbjct: 544 TLATLRALL 552