Pairwise Alignments

Query, 394 a.a., ribosomal RNA large subunit methyltransferase N from Phaeobacter inhibens DSM 17395

Subject, 373 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  323 bits (829), Expect = 4e-93
 Identities = 175/369 (47%), Positives = 228/369 (61%), Gaps = 15/369 (4%)

Query: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82
           KINL+ L R  LR      G    +   R  Q+ +W+Y +G  DF +MTN+ K  RA L 
Sbjct: 5   KINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKLA 60

Query: 83  EHFEIATPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIPEEGRGTLCISSQVGCTLTCSF 142
              E+  PE+ S Q S DGT K+ + +  G EVE VYIPEE R TLC+SSQVGC L C+F
Sbjct: 61  ARCEVVAPEISSYQKSADGTIKFAINVGNGQEVETVYIPEEDRATLCVSSQVGCALECTF 120

Query: 143 CHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDETRLLSNIVLMGMGEPLYNFE 202
           C T  Q   RNLT +EIVGQI      L      G      R +SN+V+MGMGEPL N +
Sbjct: 121 CSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETG-----ERPISNVVMMGMGEPLLNLK 175

Query: 203 NVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHATTDEVRDKLV 262
           NV  A+ I +D  G SLS+RR+T+STSGVVP +    + +   LAVS HA  DE+RD LV
Sbjct: 176 NVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLV 235

Query: 263 PINKRWNIEALLEALRAYPRLTNSE--RITFEYVMLNGVNDSDEDAHRLVELIKGIPAKV 320
           P+NK++ ++  L A+R Y   +N+   R+T EYVML+ +NDS + AH L EL+K  P K+
Sbjct: 236 PVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDTPCKI 295

Query: 321 NLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL----KSAT 376
           NLIPFN +PGSPY RSSN+RI  F+ ++ + G    +R  RG+DI AACGQL    +  T
Sbjct: 296 NLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRT 355

Query: 377 ERARKSRKQ 385
           +R  K R Q
Sbjct: 356 KRLAKKRMQ 364