Pairwise Alignments

Query, 394 a.a., ribosomal RNA large subunit methyltransferase N from Phaeobacter inhibens DSM 17395

Subject, 345 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  224 bits (571), Expect = 3e-63
 Identities = 134/355 (37%), Positives = 192/355 (54%), Gaps = 19/355 (5%)

Query: 23  KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82
           K  L+G+T  +L+  +   G P   AK    QI  W+Y        EMTNL+  YR  L 
Sbjct: 4   KYPLLGMTLIELQSLVKRLGMPGFAAK----QIASWLYDKKVTSIDEMTNLSLKYRELLK 59

Query: 83  EHFEIATPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIPEEGRGTLCISSQVGCTLTCSF 142
           +++E+     V +  S DGT KYL  +   H VE VYIP++ R TLCISSQVGC + C F
Sbjct: 60  QNYEVGAEAPVEEMRSVDGTVKYLYPVGENHFVESVYIPDDERATLCISSQVGCKMNCKF 119

Query: 143 CHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDETRLLSNIVLMGMGEPLYNFE 202
           C TG Q    NLTA +I+ QI                  E   L+N+V+MGMGEPL N E
Sbjct: 120 CMTGKQGYSANLTAHQIINQIHSL--------------PERDKLTNVVMMGMGEPLDNLE 165

Query: 203 NVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHATTDEVRDKLV 262
            V  A+ I     G + S +RIT+ST G+   + R  EE  C LA+S H+     R +L+
Sbjct: 166 EVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAISLHSPVTAQRAELM 225

Query: 263 PINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVELIKGIPAKVNL 322
           P  K ++I  ++E L+ Y   +   R++FEY++  G+NDS   A  L++L++G+  ++NL
Sbjct: 226 PAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRMNL 284

Query: 323 IPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQLKSATE 377
           I F+  PG     +  + +  F + +   G  + IR  RGEDI AACG L +A +
Sbjct: 285 IRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAACGMLSTAKQ 339