Pairwise Alignments

Query, 423 a.a., spermidine/putrescine transport system permease protein PotB from Phaeobacter inhibens DSM 17395

Subject, 427 a.a., polyamine ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  341 bits (874), Expect = 3e-98
 Identities = 190/416 (45%), Positives = 258/416 (62%), Gaps = 11/416 (2%)

Query: 9   PVLAADGTPLKRSLARALRMQKIRALMLIAPLLLFVLLTFILPIADMLFRSVENKIVSDT 68
           P+   D   LKR L  A   +++ AL LIAPL +F+LLTF+ PI  +L R++EN  V+ T
Sbjct: 13  PLAEPDPQQLKRDLRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALLQRAIENPEVAAT 72

Query: 69  LPKTVVALKDWDANSGETPDEAIFAALAADLQVAAQEKTHTRVGSRLNYENPGISSLFRK 128
           LP+TV  L  WD  S   PD+A ++ALAADL  A ++ T   +  RLN E  G  SL   
Sbjct: 73  LPQTVAVLAKWDRKSA-LPDQA-YSALAADLTRAKEDTTAGNLARRLNIELAGSRSLVMG 130

Query: 129 AGRKVKRWDLAEDGPF-----REQFIKIDEDWADPEVWRTIQTYSGAYTNGYFLNAADFQ 183
             R +   D AE  P      R+  I ++  W  P+VWR I      Y+  Y L + D +
Sbjct: 131 TTRAMPLRD-AEGKPLSPAAARDAIIALNAQWGQPDVWRVIAQNGSVYSPYYLLASLDLR 189

Query: 184 KGAEG-AELRPENERIYGTLFLRTLIMSLAITVSCIVLGYPVAWILANLPSRTANLLMIL 242
           +   G  E  P    IY T+F RTL MS  +T   ++L YP+A+ L+ +P R ANLLMIL
Sbjct: 190 QNVFGDIEAAPPESAIYRTIFGRTLWMSAVVTCITLLLAYPLAYWLSTMPERRANLLMIL 249

Query: 243 VLLPFWTSLLVRTSAWKVMLQQQGVINDTLVWLGLVADDARLVMINNQFGTIVAMTHILL 302
           VL+PFWTS+LVR +AW V+LQ +G++N  L+  GL      LV   N+ G  ++MTHILL
Sbjct: 250 VLIPFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVF--NRVGVYISMTHILL 307

Query: 303 PFMILPMYSVMQTINPSYLRAAKSLGATNWTAFWRVYFPQSVPGIGAGSILVFILAIGYY 362
           PFMILP+YSVM+++  +YL+AA SLG+  + AFWRVY PQ+ PGIGAG +LVFI+A GYY
Sbjct: 308 PFMILPLYSVMKSVPATYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYY 367

Query: 363 ITPELVGGTKGVFISNRIAFHISQSLNWGLAAALGSILLVVVLALYWAYDKIVGID 418
           ITP L+GG     +S  IA+ I+ ++NWG+A ALG++LL   L LY  Y +   +D
Sbjct: 368 ITPALLGGPNEQMVSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFAKVD 423