Pairwise Alignments

Query, 348 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

Subject, 332 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

 Score = 70.9 bits (172), Expect = 5e-17
 Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 14/275 (5%)

Query: 55  VEASSDGRIKIDRYPSMQLGGKPPE---LMDQAIDGVADIVWTVVGYTPGRYPSTEVFEL 111
           VE    G++K++ YP+  L G   E   L D  +  +A  +     YT       +VF+L
Sbjct: 53  VEQRMAGKVKVEVYPNSTLVGDAEEMQALFDNKVQLLAPSMSKFAPYTK----KLQVFDL 108

Query: 112 PFMMTNARAASHAYW-EMFDEHMKDTEFKDVKILGTWVHGPGIIHTTDPVESPDDLRGMK 170
           PF+  +A A       E   + ++      V  L  W +G   +  T P+  P D  G+ 
Sbjct: 109 PFLFDDAEALQRFQKREAARQLLRSMADHGVYGLAYWNNGLKQLSATTPLRKPSDANGLA 168

Query: 171 IRGGGRSV-NGLLTELGATPVGMPVPAIPEALSKGVIDGTTIPWEVTTALKVPELVENHT 229
            R     V       +GA  V +P   + E+L  GV+ G   PW    +  +  +    T
Sbjct: 169 FRIQPSPVLEAQFAAVGAKSVVLPFAKVYESLKGGVVQGAENPWSNILSQNMHSVQPYIT 228

Query: 230 EFTGRALYTLTFVLAMNKEKYESLPDDLKKAVDENSGLEFSVFAGGTMADADTPAREFAL 289
           E        L ++L  N + + S+P  ++  + E   LE +       A  +   RE  L
Sbjct: 229 ESNHG---VLDYMLITNNDFWLSMPFAVRSEL-EGIILEVTQAVNREAAAVNRRDRERIL 284

Query: 290 DEGNN-VITLDEEQTAIWREASQPIYKQWLDDMKA 323
             G++ +ITL  E+   WRE   P++K +  D+ A
Sbjct: 285 ASGSSQLITLTPEERQAWREQMLPVWKTYEADIGA 319