Pairwise Alignments

Query, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

Subject, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  953 bits (2463), Expect = 0.0
 Identities = 531/1120 (47%), Positives = 701/1120 (62%), Gaps = 72/1120 (6%)

Query: 28   YAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRDPQ 87
            Y+EL VT+NF+FL GASH  EL+ +A       +AITD N+LAG+VRA +A +E      
Sbjct: 3    YSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKN---- 58

Query: 88   DALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDRSA 147
                                              KLI  CRL + +     +A P D+ A
Sbjct: 59   ---------------------------------VKLIPACRLDMLD-GPSLLAYPTDKDA 84

Query: 148  YKRLARLLTLGKRRAEKGQCLLYAEDMIDACKGMIL-IALPKETL------SNAVSDIQK 200
            Y RL+ LLTLG  RAEKG C +   D+    KG+I  + +P E        ++ +S + +
Sbjct: 85   YGRLSALLTLGNMRAEKGSCHISRADVYAHSKGIIFCLVMPGELNRRFEYEASFISAVAE 144

Query: 201  IGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQLADVLT 260
              +     ++L AT  Y G+D   +   ++L+     P+VA GD+  H  +RR+L DVLT
Sbjct: 145  YKQALNGQLYLAATRSYMGNDDKLIFRTSQLSDFYGIPVVATGDIHYHNPSRRELQDVLT 204

Query: 261  CMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDLSELSYE 320
            C+RE   I + G R   NAER +K  A+M R+FR +P+A++ T  IA  CNF L EL Y 
Sbjct: 205  CVREKCTIQEAGFRLHQNAERYMKEVAEMERLFRKYPSAIKNTMVIAEACNFSLDELKYV 264

Query: 321  YPHE-EAEGETPQDRLERLAREGLKRRYPDGPPDRAIKLMEKELSAVKDLEFPAYFLTVH 379
            YP E    G++P + LE L  +G    Y +  P++ +K++  E+  V+ +++  YFL V 
Sbjct: 265  YPEEINQSGKSPMEELEFLTWKGAHEFYGEEIPEKVVKMIHHEMEFVRHMDYANYFLFVE 324

Query: 380  DIVQFARSKGILCQGRGSAANSILCYLLGITDVSPDMIAMVFERFVSKHRGEPPDIDVDF 439
            DIV+ ARS+GILCQGRGSAANS +C++LGIT V+P    ++FERF+S  R EPPDIDVDF
Sbjct: 325  DIVREARSRGILCQGRGSAANSAICFVLGITSVNPMKFDLLFERFISPARNEPPDIDVDF 384

Query: 440  EHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTAGLSGQIWGM 499
            EHERREE+IQ+IY KYGR RA + ATV     + AIR+VGK MGLS D    LS  IW  
Sbjct: 385  EHERREEIIQYIYNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRLSSSIWEF 444

Query: 500  SNGSVDLERIRELGLNLEDRRLMQTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIE 559
            ++   + +R+ E GLN  D  L +T+ L  +++GFPR L QH GGFV+T G+L +L PI 
Sbjct: 445  TDEWFEGKRVTEQGLNPNDPHLKKTLELTSQMMGFPRQLGQHTGGFVVTQGKLTDLCPIL 504

Query: 560  NAAMENRTVICWDKDDIDALRILKVDILALGMLTCIRKAFALMQQHENITHSIATIPQKD 619
            NA ME+RT I W+KDDIDAL  LKVD+LALGMLTCIRKAF L + +     ++A IPQ D
Sbjct: 505  NARMEDRTNIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLCRDYYGKHFTLANIPQDD 564

Query: 620  EATYDMLCAADAVGVFQVESRAQMNFLPRMRPREFYDLVIEVAIVRPGPIQGDMVRPYIR 679
               YDM+C AD +GVFQ+ESRAQM+ LPR++PREFYDLVIEVAIVRPGPIQGDMV PY+R
Sbjct: 565  PEVYDMICLADTLGVFQIESRAQMSMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLR 624

Query: 680  RRNGLEKPDPFGPQLEQVTRRTKGVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRM 739
            RRNG E      P+LE++  RT GVPLFQEQA++IA+V AGF+  EAD LRRS+A+F+  
Sbjct: 625  RRNGEEPVVYPSPELEEILGRTLGVPLFQEQAMKIAIVAAGFTPAEADGLRRSMATFKFK 684

Query: 740  GTISKYRDKFIAGMLKNKYSREIAERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCH 799
            G +++Y  K I GML   Y+ E A+R F Q+EGF  YGFPESHAA+FA+L YVS WLK +
Sbjct: 685  GLVNQYEQKLIEGMLAKGYTLEFAKRIFKQLEGFGSYGFPESHAASFALLVYVSCWLKHY 744

Query: 800  HPAIFACALLNSQPMGFYAPAQIVRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRL 859
            +P +FA ALLNS PMGFY PAQIV D + H +EVR + VN S WDN LE +     A+RL
Sbjct: 745  YPDVFAAALLNSMPMGFYQPAQIVIDAQKHTVEVREVDVNHSLWDNKLEEKSGKYFAMRL 804

Query: 860  GFRQIKGFKEDDTGWIIAARGNGYIDPEHLWLRAGLAPAALERLAEADAFSSMGISRRDA 919
            GFRQI G + DD   ++  RG GY     L    G++ AALERLA+ADAF SMG+ RR A
Sbjct: 805  GFRQISGIRADDVDTLVNGRGEGYKSITAL-RDVGVSIAALERLADADAFRSMGMDRRKA 863

Query: 920  LWQVKSITTPAPLPLFNDQLDGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELL 979
            LW+V ++    P+ LF  Q   E++ E  V LP M  GE VV+DY ++ LSL+AHP   +
Sbjct: 864  LWEVSAL-QDMPVELFKGQA-SESVLETQVELPLMGKGEHVVQDYATVGLSLKAHPGSFV 921

Query: 980  RPTLPGL-----------TCNDQLIKAPLQRVSVGGLVITRQRPGTASGVIFLTLEDETG 1028
            RP L  L           + N QL+K       V GLV+ RQRPGTA GV F+T+EDETG
Sbjct: 922  RPQLDMLNIRSCHHINNDSTNGQLVK-------VAGLVLVRQRPGTAGGVCFITIEDETG 974

Query: 1029 VCNVVVWKKIYERFRRIVMGGRLLCVTGYLQREGTIVHVIAQHIEDESARLSEL-GHPLD 1087
              N+VV++K+++ +R+ ++  RLL V G LQREG +VHVI     D +  L +L    +D
Sbjct: 975  YSNLVVFEKLFDTYRKEILHARLLMVEGRLQREGKVVHVIVSKCFDFTKMLGKLVQREVD 1034

Query: 1088 GAIQSEGPRADDTPKRTRYPARAMHPRDQAKRLFPSRDFH 1127
                    R D+  K   YP++  + R Q +   P   FH
Sbjct: 1035 ELPVLTMARGDE--KTAPYPSQ--NKRTQVREDVPKEAFH 1070