Pairwise Alignments

Query, 378 a.a., DNA polymerase IV from Phaeobacter inhibens DSM 17395

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (454), Expect = 1e-49
 Identities = 107/265 (40%), Positives = 157/265 (59%), Gaps = 9/265 (3%)

Query: 1   MDCDAFYASVEKRDNPDLADKPVVIGGG--QRGVVSTACYVARIRGVRSAMPMFQALKLC 58
           +D D F+A+VE RDNP   +  + +GG   QRGV+ST  Y AR  GVRSAMP  QALKLC
Sbjct: 11  VDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLC 70

Query: 59  PDAVVIKPRMNVYVDVSRQIRAMMDELTPDVEPLSLDEAFMDLSGTQRLHGAPPAVMLAR 118
           P   V+  RM+VY  VS+QI+ +    T  +EPLSLDEA++D+S +    G+  A ++A+
Sbjct: 71  PQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGS--ATLIAQ 128

Query: 119 LVKR-MKDELGVTGSIGLSHNKFLAKVASDLDKPRGFSVIGAAETSEFLKDKPVRLIWGI 177
            ++R +  EL +T S G++  KFLAKVASDL+KP G  V+   +  E +   P+  I G+
Sbjct: 129 AIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGV 188

Query: 178 GPAAQASLDKAGIRSFSDLLRWDRTDLNARFGSMGERLWHLARGQDRRRVSSNAPIKSIS 237
           G  A   L +AG+   +D+ R D   L  +FG +G  LW  + G D R V +    KS+ 
Sbjct: 189 GKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERKSVG 248

Query: 238 NETTFFEDTASLEVLDGHLWRLAEK 262
            E TF ++ ++ +      W++ E+
Sbjct: 249 VEYTFSQNISTFQ----ECWQVIEQ 269