Pairwise Alignments

Query, 378 a.a., DNA polymerase IV from Phaeobacter inhibens DSM 17395

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

 Score =  189 bits (479), Expect = 1e-52
 Identities = 118/299 (39%), Positives = 176/299 (58%), Gaps = 9/299 (3%)

Query: 1   MDCDAFYASVEKRDNPDLADKPVVIGG--GQRGVVSTACYVARIRGVRSAMPMFQALKLC 58
           +D D F+A+VE RD P+L  KP+ +GG   +RGV+ST  Y AR  GVRSAM    ALKLC
Sbjct: 7   VDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAYALKLC 66

Query: 59  PDAVVIKPRMNVYVDVSRQIRAMMDELTPDVEPLSLDEAFMDLSGTQRLHGAPPAVMLAR 118
           PD +++  RM+VY +VS QIR +    T  +EPLSLDEA++D+S   +  G+  A ++A 
Sbjct: 67  PDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGS--ATLIAE 124

Query: 119 LVKRMKDEL-GVTGSIGLSHNKFLAKVASDLDKPRGFSVIGAAETSEFLKDKPVRLIWGI 177
            ++R   E+ G+T S G++  KFLAK+ASDL+KP G  VI      EF+K   +  I G+
Sbjct: 125 AIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKIPGV 184

Query: 178 GPAAQASLDKAGIRSFSDLLRWDRTDLNARFGSMGERLWHLARGQDRRRVSSNAPIKSIS 237
           G    A L+  G+ + +D+    R  L  RFG  G  L+  A+G D R +S +   KS+ 
Sbjct: 185 GKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERKSVG 244

Query: 238 NETTFFEDTASLE----VLDGHLWRLAEKVSDRAKARQLAGRVVTLKLKRANHSSLTRR 292
            ETT  +D  + E    V+   +  L+ ++S  AK+R++  +VV LK      +++ +R
Sbjct: 245 VETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIEQR 303