Pairwise Alignments

Query, 378 a.a., DNA polymerase IV from Phaeobacter inhibens DSM 17395

Subject, 418 a.a., DNA polymerase IV-kappa DinB from Caulobacter crescentus NA1000

 Score =  369 bits (947), Expect = e-107
 Identities = 199/379 (52%), Positives = 262/379 (69%), Gaps = 4/379 (1%)

Query: 1   MDCDAFYASVEKRDNPDLADKPVVIGGGQRGVVSTACYVARIRGVRSAMPMFQALKLCPD 60
           MDCDAFYASVEKRD+P L D PV+IGGG+RGVV+TACY+AR+ G +SAMPMF+ALKLCPD
Sbjct: 41  MDCDAFYASVEKRDDPSLRDLPVIIGGGKRGVVTTACYIARMSGAKSAMPMFKALKLCPD 100

Query: 61  AVVIKPRMNVYVDVSRQIRAMMDELTPDVEPLSLDEAFMDLSGTQRLHGAPPAVMLARLV 120
           AVVIKP    Y + SR+I   +D LTP ++PLSLDEA++DL+GT+RLHGA PA MLARL 
Sbjct: 101 AVVIKPNFAKYKEESRRIHEKLDRLTPLIQPLSLDEAWIDLTGTERLHGATPAQMLARLQ 160

Query: 121 KRMKDELGVTGSIGLSHNKFLAKVASDLDKPRGFSVIGAAETSEFLKDKPVRLIWGIGPA 180
             ++ ++G+T S+GL+ NKFLAK+AS+LDKPRGFS IGAAE   FL +KPV ++ G+GPA
Sbjct: 161 AEIERDIGLTVSVGLAPNKFLAKIASELDKPRGFSAIGAAEAQSFLANKPVNILPGVGPA 220

Query: 181 AQASLDKAGIRSFSDLLRWDRTDLNARFGSMGERLWHLARGQDRRRVSSNAPIKSISNET 240
             ASL + G+R+  D+   D   L  R GS G RL  LA GQD R V  +   K+IS ET
Sbjct: 221 TVASLAEIGLRTVGDIAAADLKLLANRLGSGGMRLHRLAHGQDSRIVDPDQARKTISAET 280

Query: 241 TFFEDTASLEVLDGHLWRLAEKVSDRAKARQLAGRVVTLKLKRANHSSLTRRQSLRDATQ 300
           TF +D    E L+  LW L EKV+ +A+   +AGRV TLKL+  +    TRR++L   TQ
Sbjct: 281 TFNDDLHKREDLEDELWPLCEKVAKQARQEGVAGRVATLKLRTPDFKIHTRRRTLAVPTQ 340

Query: 301 IADTVYRTARALLDQVGDEGPYRLLGCGISDLVPETQADITG-DLLDPQAGQRAKAERAT 359
            A T+++ AR LL        YRL+G G+++ V    AD  G D+   +  +  K+E A 
Sbjct: 341 TARTLFQVARELLSAEPRGLAYRLIGAGLTEFV---DADTAGADMFADEERRALKSETAI 397

Query: 360 DAIRERFGKSAIQKGRSLR 378
           DA+R +FG +A+  GR+L+
Sbjct: 398 DALRGKFGAAAVVTGRALK 416