Pairwise Alignments

Query, 899 a.a., chaperone protein ClpB from Phaeobacter inhibens DSM 17395

Subject, 857 a.a., clpB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  948 bits (2450), Expect = 0.0
 Identities = 477/847 (56%), Positives = 635/847 (74%), Gaps = 1/847 (0%)

Query: 28  MDLNKFTERARGFVQAAQTIARREDHQRLMPEHLLKALMDDDQGLASNLITRAGGTPEQV 87
           M L++ T + +  +  AQ++A   DHQ + P HL+ AL++ D G    L+T+AG     +
Sbjct: 1   MRLDRMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSAL 60

Query: 88  VQALELAVSKLPRVQGNSADIYLDGQTAKVLDEAAKIAEKAGDSFVPVERLLMALCMVKS 147
              L   + +LP+V+G   D+ L     ++L+   K+A+K  D ++  E  ++A      
Sbjct: 61  RSLLSQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKYISSELFVLAALEGCD 120

Query: 148 KAKDALADGNVSAQALNEAVNDIRKGRKADSASAEDGYDALKKYARDLTEAVRDGKIDPI 207
                L     + + + + +  +R G+K D  +AED   ALKK+  DLTE    GK+DP+
Sbjct: 121 ALAQCLKKSGATKELMEQTIEQVRGGQKVDDPNAEDQRQALKKFTVDLTERAEQGKLDPV 180

Query: 208 IGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGMALRIVNGDVPESLRDKQLLSL 267
           IGRD+EIRR +QVL RRTKNNPVLIGEPGVGKTAI EG+A RIVNG+VPE +++K++LSL
Sbjct: 181 IGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGIKNKRVLSL 240

Query: 268 DMGALIAGAKYRGEFEERLKAVLTEVTEAAGEIILFIDEMHTLVGAGKSDGAMDAANLIK 327
           DMGALIAGAKYRGEFEERLKAVL E+ +  G++ILFIDE+HT+VGAGK DGAMDA N++K
Sbjct: 241 DMGALIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKGDGAMDAGNMLK 300

Query: 328 PALARGELHCIGATTLDEYRKYVEKDAALARRFQPVMVTEPTVEDTISILRGIKEKYELH 387
           PALARG+LHC+GATTLDEYR+Y+EKDAAL RRFQ V+V EP+VEDTI+ILRG+KE+YELH
Sbjct: 301 PALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELH 360

Query: 388 HGVRIADAALVSAATLSHRYITDRFLPDKAIDLMDEAAARLRMQVDSKPEELDALDRQIL 447
           H V I D A+V+AAT+SHRY++DR LPDKAIDL+DEAA+ +RMQ+DSKPE LD L+R+ +
Sbjct: 361 HHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMDSKPESLDRLERRAI 420

Query: 448 QMQIEEEALKLEDDAASKDRLETLQKELAELQEKSAEMTAQWQSERDKLASARGLKEQLD 507
           Q+++EE+AL  E+D AS+ RL+ LQ+EL +++ K++E++  W++E+  LA  + +K  L+
Sbjct: 421 QLKLEEQALAKENDEASRRRLDHLQEELRDVEAKASELSEIWRTEKAALAGTQHIKADLE 480

Query: 508 RARADLDAAKREGNLARAGELSYGVIPGLEKQLSEAEASERNGL-MVEEAVRPEQIAGVV 566
           +AR DL+ A+R G+L R  EL YG IP LEKQL  A  +E   + ++   V   +IA V+
Sbjct: 481 QARLDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQDMTLLRNKVTDLEIAEVL 540

Query: 567 ERWTGIPTSKMLEGEREKLLRMEADLHGRVIGQDAAVTAVSNAVRRARAGLNDENRPLGS 626
            + TGIP SKMLEGEREKLL+ME  LH RVIGQ+ AV AV+NA+RR+RAGL D NRP+GS
Sbjct: 541 SKATGIPVSKMLEGEREKLLQMEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGS 600

Query: 627 FLFLGPTGVGKTELTKAVADFLFDDDSAMVRVDMSEFMEKHAVARLIGAPPGYVGYDEGG 686
           FLFLGPTGVGKTEL K++A FLFD +SA+VR+DMSEFMEKHAV+RL+GAPPGYVGY+EGG
Sbjct: 601 FLFLGPTGVGKTELCKSLARFLFDSESALVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGG 660

Query: 687 VLTEAVRRKPYQVILFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIILTSNL 746
            LTEAVRRKPY VIL DEVEKAHPDVFN+LLQVLDDG LTDGQGRTVDF+ T+II+TSNL
Sbjct: 661 YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 720

Query: 747 GAQALSQLPDGADAADAKRDVMDAVRAHFRPEFLNRLDETIIFDRLGRKDMDGIVTLQLA 806
           G+  + +       ++ K  VM+ V   FRPEFLNR+DE+++F  L  +++  I ++Q+A
Sbjct: 721 GSDIIQEGFGHLSYSEMKSAVMNVVTHSFRPEFLNRIDESVVFHPLDAENIKHIASIQIA 780

Query: 807 RLEKRLVGRKITLELDDGAKTWLADEGYDPVFGARPLKRVIQRVLQNPLAEMLLAGEIRD 866
            L KRL  +  TLE+ D A + +A+ G+DPV+GARPLKR +Q+ ++NPLA+ LL G++  
Sbjct: 781 SLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGDLLP 840

Query: 867 GDTVPVS 873
           G  + VS
Sbjct: 841 GKPIKVS 847