Pairwise Alignments

Query, 500 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score =  174 bits (440), Expect = 8e-48
 Identities = 129/493 (26%), Positives = 229/493 (46%), Gaps = 44/493 (8%)

Query: 10  MFAGMMLMLMTGQRVFGAIGFVGALAGMLLWGTGGSEIPFSAAMKLMKWYPLLTLPMFIF 69
           +F  + L ++ G  +  A+GF   L  +L      + +         + Y LL +P FI 
Sbjct: 6   LFISLFLCMLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAIPFFIL 65

Query: 70  MGYVLSESKIADDLYRMFHVWMGPVKGGLAIGTIGLMVLISAMNGLSVAGMAIGATIALP 129
               LS   +A  +       +G ++GGLA+ ++   +L +A++G S A +A   +I + 
Sbjct: 66  SSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIV 125

Query: 130 ELLRRGYDKTLVTGTIQAGSSLGILVPPSVVLVLYAMIARQPVGQLWLAGVVPGLLMATM 189
            ++R GY +    G I    +LGIL+PPS+V+++YA        ++++AG++PGL+M  +
Sbjct: 126 GMVRAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGLMMGLL 185

Query: 190 FIIYIYLRARMQPELGPAMSPEDLAEYERISDHPLRLNYVALALLVLVPLVVKLGVIEAK 249
            ++ IY+ AR+                +++   P              P    L +  AK
Sbjct: 186 LMLAIYIVARI----------------KKLPSRPF-------------PGFRPLAISSAK 216

Query: 250 PAIGVALAGSVLAFVTRGIPAFYHDVFMREKYRLLFSGVLPLAIFAAMMV-PFVN-GWTS 307
              G+AL   VL  +  GI +      +   Y         +A+F    + P  N  W  
Sbjct: 217 AMGGLALIVIVLGSIYGGIASPTEAAAVACVYAYF------IAVFGYRDIGPLKNVSWRD 270

Query: 308 LVE---SSAIGAMTAFIAAILKGRMNKEVFETSVRSTLGISCMFMWIILAALGFGAIFDG 364
             E    + +  +   + A+ K   +KE+    VR    +S M ++II  A+ F  +   
Sbjct: 271 SGEPLIRAILRNLGFMVLAVFKTPADKEIRHV-VRDGAKVSIMLLFIIANAMLFAHVLTT 329

Query: 365 LGAVKAIEDLFTTQLGLSPWMILILMQLSFIVMGTFLDDTAMLVIVAPLYVPLVGALGFD 424
                 I +     +GL  W  LI++ L  +  G F++ +A+L+I+AP+  P+   LG D
Sbjct: 330 ERIPHLIAETI-VGMGLPVWGFLIIVNLLLLAAGNFMEPSAILLIMAPILFPIATQLGID 388

Query: 425 LIWYGVLYTITTQIAYMTPPFGYNLFLMRAMAPPEIGLKDIYVSIIPFAAVMVVALALVM 484
            I  G++  +  +I  +TPP G NLF+   +    +G   +  S IP+ A+++  LAL+ 
Sbjct: 389 PIHLGIIMVVNMEIGMLTPPVGLNLFVTAGITGRSMGW--VIHSCIPWLALLLFFLALIT 446

Query: 485 IFPQIALWLPEYV 497
             PQI+L+LPEY+
Sbjct: 447 YIPQISLFLPEYI 459