Pairwise Alignments

Query, 732 a.a., uvrABC system protein B from Phaeobacter inhibens DSM 17395

Subject, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

 Score = 46.6 bits (109), Expect = 7e-09
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 15/228 (6%)

Query: 43  PTAIKELSEGVLEGERNQV--LLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYG 100
           P   + L++    GER  +  L G+        +       +R   +L  +   A +L  
Sbjct: 56  PEISRALAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLE 115

Query: 101 EFKGFFPENSVEYFVSFYDYYQPEAYVARSDTYIEKESQINEQIDRMRHSATRSLLERDD 160
           E   F P+  V           P+      D +      ++E++  + ++ +R   E   
Sbjct: 116 EIPWFAPDLKVRLL--------PDWETLPYDNFSPHHDLVSERLATL-YAVSRGECE--- 163

Query: 161 VIIIASVSCIYGIGSVETYSAMTQDLKVGDEYDQRQVMADLVAQQYKRNDQAFQRGSFRV 220
           V+++ + + +Y +      +A T  LK G++ D  Q  + L    Y    Q    G + +
Sbjct: 164 VLLVPATTAVYRLTPPSYLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSI 223

Query: 221 RGDSLEIFPAHLEDRAWRLSFFGEELEGITEFDPLTGEKTGTFDQIRV 268
           RG  +++FP       +R+  F EE+E +  FD  T        +IR+
Sbjct: 224 RGGLVDLFPMG-SALPYRIDLFDEEIETLRTFDADTQRSLYPVPEIRL 270



 Score = 30.4 bits (67), Expect = 6e-04
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 483 MAEDLTEYMHEQGIKVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGL 542
           M E L   + E  I V +   +   LER+  +RD      ++L+   ++  G+D P    
Sbjct: 880 MREKLQSLVPEARIVVGHGQMNERELERV--MRDFTQQRANLLLCTTIIETGIDNPHANT 937

Query: 543 VAILDADKEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETNRRRDKQIA 602
           + I  A+K G L     L   +GR+   A   +++         E+AL +  ++R + I 
Sbjct: 938 ILINRAEKFG-LAQLHQLRGRVGRSHHQAYSYLLV-------QDEKALTKQAKQRLEAIQ 989

Query: 603 YNEEHG 608
           + EE G
Sbjct: 990 HMEELG 995