Pairwise Alignments

Query, 350 a.a., putative glycine betaine/L-proline transport system, ATP binding subunit from Phaeobacter inhibens DSM 17395

Subject, 408 a.a., Glycine betaine transport ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  269 bits (688), Expect = 8e-77
 Identities = 143/332 (43%), Positives = 223/332 (67%), Gaps = 7/332 (2%)

Query: 4   TKIQIRNLYKIFGANPGTVLPMVRNQGMGKSQLLEEHKHVLGLQDISIDIQAGEISVIMG 63
           +KI+I++LY +FG      L M++ +G  KS++L+     + ++D ++ I  GEI VIMG
Sbjct: 2   SKIEIKDLYLVFGNEKQKALKMLK-EGKTKSEILKATGCTVAVKDANLSINEGEIFVIMG 60

Query: 64  LSGSGKSTLIRHLNRLIEPTAGEILLDGQDVMDLDPVQLREMRQRSMSMVFQKFALLPHK 123
           LSGSGKSTL+R +NRLI PT+GE++++G D+  +   +L ++R++ ++MVFQ F LLPH+
Sbjct: 61  LSGSGKSTLLRCINRLIRPTSGEVIINGTDIAKVSDKELLQIRRKELAMVFQNFGLLPHR 120

Query: 124 TVLENAETALRVRGDDRATCEAAARKWLDRVGLSGFENRYPSQLSGGMQQRVGIARALTA 183
           +VL N    L ++G  +   E  A + +  VGL G+EN+  S+LSGGMQQRVG+ARAL  
Sbjct: 121 SVLHNIAFGLELQGVKKGEREQKAMESMQLVGLKGYENQMVSELSGGMQQRVGLARALAN 180

Query: 184 DTDIMLLDEAFSALDPLIRTDMQDLLLELQTELHKTIVFITHDLDEALKLADHLVILKDG 243
           + +++L+DEAFSALDPLIR  MQD LL LQ+++ KTIVFITHDL EA+KL D + I+KDG
Sbjct: 181 NPEVLLMDEAFSALDPLIRVQMQDELLTLQSKMKKTIVFITHDLSEAIKLGDRIAIMKDG 240

Query: 244 AVVQQGPPQGIVMNPADPYIEAFVGDINRARVLRAGTIAVTGEPEGRLAGEVDWQDTLET 303
            +VQ G  + I+  PA+ Y+E FV +++R++++ A ++ V      RL  E       E 
Sbjct: 241 EIVQIGTSEEILTEPANAYVERFVENVDRSKIITASSVMVDKPIVARLKKEGP-----EV 295

Query: 304 VIKKAGGRADVSVSVL-RDGQVAGKIEMSELM 334
           +I+K   R    + V+  +  + G++ +++L+
Sbjct: 296 LIRKMRERNLTVLPVVDSNNLLVGEVRLNDLL 327