Pairwise Alignments

Query, 318 a.a., putative D-ribose-binding periplasmic protein from Phaeobacter inhibens DSM 17395

Subject, 311 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 13/317 (4%)

Query: 3   LRRMLATTTATAAMAVAGMAAAETMTIGITQNNVGVDSYQTTYEKAFIAAAEANADVEVV 62
           ++  +A T+   A+ +   AA   + IG++ +    D++ T       A A+  +  E V
Sbjct: 1   MKTKIALTSLAMALMLGSGAALADIKIGVSMSQFD-DTWLTYLRDDMSAKAKVMSTTEKV 59

Query: 63  VL---DAGGDVARQIAQMEDLIQQEVDAIIIWPTNGEAVIPAVRKAHQADIPVVVTNSNI 119
            L   DA  DV +Q+ Q++DLI ++VDA+I+ P +  A     ++A  A IP+V  N   
Sbjct: 60  DLQFVDARADVNKQLDQVKDLINKKVDALIVNPVDTAATARITKEAVAAGIPLVYVNRRP 119

Query: 120 AEAGFPFVATFSGPDNITQGARSAEIMCDRFKSLGTENEAKVVHITGQPGYTTAIERAKG 179
            +   P        D++  G   A+ + D+ K  G      V+ + G     +   R KG
Sbjct: 120 DDLNLPAGVATVTSDDVEAGRLQAQYIADKMKDKG-----DVMILLGDLANNSTQNRTKG 174

Query: 180 FNDRLPEVCPNVEQIDEQPGDWNREKSQQVMEAFLVKYDDIDGVYSGDDNMGVGAMNAAV 239
             + L +  P+++  +EQ G + R+K   +   +L +    + V + +D M +GA  A  
Sbjct: 175 VKEVLDKY-PDIKIEEEQTGTYLRQKGMDLTNDWLTQGRKFNAVLANNDEMAIGAAMALK 233

Query: 240 AAGRE--GITFVGATNFAVGYEAMAAGTYWGSIYQSPVDDAEAALKSAIDLLNGEEL-PF 296
            AG E   I   G      G  A+  G    S+YQ     A+ A+ +A+ L   E++ P 
Sbjct: 234 QAGVEKGSILIAGVDGTPDGLNAVTKGDLAVSVYQDAKGQADGAIDAAVKLARKEKIEPQ 293

Query: 297 LNYFDTPKITQDNMGDF 313
                   IT +N+  F
Sbjct: 294 AIIIPYRLITPENVATF 310