Pairwise Alignments

Query, 411 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Phaeobacter inhibens DSM 17395

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  261 bits (668), Expect = 2e-74
 Identities = 158/434 (36%), Positives = 231/434 (53%), Gaps = 34/434 (7%)

Query: 5   VLVVDDDAAVRAALGQTLELAECDAITVGSFVAAKDLITPDFDGVILSDMRMPGRDGFHL 64
           VL+V+DD  V     Q L L +   I VGS   A + +  +F G+++SD+R+PG DG  L
Sbjct: 7   VLIVEDDPHVLLGCKQALTLEDIPCIGVGSAEEALERVDDNFAGIVISDIRLPGIDGLEL 66

Query: 65  LRYVREVDGDLPVILLTGEGDIPMAVQAMGEGAFDFLEKPCASVDLMAVVRRALKTRALV 124
           L  ++  D  LPV+L+TG GDI MAV AM +GA+DF+EKP +   L+ V RRAL+ R+L 
Sbjct: 67  LTRLKARDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSLA 126

Query: 125 RENRALKSRLESGDPAARMIFGTSPQMEELRARARGVAATGAEVLVTGAPGGGISKVAEV 184
           RE  +L+ +L   D     I G SP M+ LRA    VA T A VL+ G  G G   VA  
Sbjct: 127 REVSSLRRQLAERDSLEGRIIGRSPAMQHLRALIANVADTSANVLIEGETGTGKELVARC 186

Query: 185 IHLMSPRGQGAFVKRPAAGLTPDGFAD-------------------LCREAAGGSLYLDE 225
           +H  S R    FV     GL  + F                         A GG+L+LDE
Sbjct: 187 LHDFSRRHDKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLDE 246

Query: 226 IAALPSETQYAMLEALE----------QEQGLEARVLVGSVADLAEEAAQGRFLPDLFYR 275
           + ++P   Q  +L  L+          Q   ++ RV+  + +DL E    G+F  DL+YR
Sbjct: 247 VESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMGRTGQFRSDLYYR 306

Query: 276 LDVMRVRIPALSERPEDIPVLFSHYVAQAAEQAGIAAPDIPQEHLAALMAQDWPGNARSL 335
           L+V+ + +P L ER EDI  LF H++ Q++ +     P++  + L+ LM+ DWPGN R L
Sbjct: 307 LNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRTVPELDNQTLSNLMSHDWPGNVREL 366

Query: 336 MSAAMRFVLGMPEEAAQSAE-----LGLAEQLAQVERSLLIAALGRQNGHASAAAKALKL 390
            + A R+ LG+P      A      L  AE +   ER+LL+ AL R  G+ + A++ L +
Sbjct: 367 RNVAERYALGLPAFKRSGASGGNQGLAFAEAVEAFERNLLVDALQRSGGNLTQASQELGM 426

Query: 391 PRKTFYDKLARYGI 404
            + T +DK+ +YG+
Sbjct: 427 AKTTLFDKVKKYGL 440