Pairwise Alignments

Query, 411 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Phaeobacter inhibens DSM 17395

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  254 bits (649), Expect = 4e-72
 Identities = 170/445 (38%), Positives = 241/445 (54%), Gaps = 42/445 (9%)

Query: 5   VLVVDDDAAVRAALGQTLELAECDAITVGSFVAAKDLITPDFDG---VILSDMRMPGRDG 61
           V ++DD++ +R AL Q+ ELA+ +A    S   A  L+     G   VI+SD+ +PG  G
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEA--LLAIKAQGLPLVIVSDICLPGLSG 61

Query: 62  FHLLRYVREVDGDLPVILLTGEGDIPMAVQAMGEGAFDFLEKPCASVDLMAVVRRALKTR 121
            +LL  V   D +LPVIL+TG GDI MAV+AM +GA+DF+EKP A   L+  V RA++ R
Sbjct: 62  QNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKR 121

Query: 122 ALVRENRALKSRLESGDPAARMIFGTSPQMEELRARARGVAATGAEVLVTGAPGGGISKV 181
            L  ENR LK  L+        I G +  ++ LR     VA T A++L+ G  G G   V
Sbjct: 122 RLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181

Query: 182 AEVIHLMSPRGQGAFVKRPAAGLTPDGF---------------ADLCR-----EAAGGSL 221
           A  +H  S R +  FV     G  P+                 AD  R      A GG+L
Sbjct: 182 ARSLHEQSSRREQNFV-AINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240

Query: 222 YLDEIAALPSETQYAMLEALEQEQ----------GLEARVLVGSVADLAEEAAQGRFLPD 271
           +LDEI ++P + Q  +L  L++             L+ RV+  +  DL + AA+G+F  D
Sbjct: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300

Query: 272 LFYRLDVMRVRIPALSERPEDIPVLFSHYVAQAAEQAGIAAPDIPQEHLAALMAQDWPGN 331
           L+YRL+++ + IP L ER EDIP LF H++  AA + G AA  +    + +L++ DWPGN
Sbjct: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360

Query: 332 ARSLMSAAMRFV-LGMPEEAAQSAE-----LGLAEQLAQVERSLLIAALGRQNGHASAAA 385
            R L +AA R+V LG   + A+S E     LGL EQ+A+ E+SLL   L    G   A  
Sbjct: 361 VRELRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATM 420

Query: 386 KALKLPRKTFYDKLARYGIRPEDYR 410
           + L LPRKT YDK+ +Y +  E Y+
Sbjct: 421 ERLHLPRKTLYDKMQKYQLDKESYK 445