Pairwise Alignments

Query, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  400 bits (1029), Expect = e-116
 Identities = 211/459 (45%), Positives = 300/459 (65%), Gaps = 35/459 (7%)

Query: 1   MDVVLLFSMVIGLLLIGVPIAVALGLSSTLFLLIYSDSSLASVAGTLFEAFEGHFTLLAI 60
           M  +++F++++ L+L G+PI+++LGL+   FL   +   + SVA  LF   E  F ++AI
Sbjct: 1   MSALIIFTLLLCLMLTGMPISISLGLTVLTFLFTMTTVPIESVALKLFTGIE-KFEIMAI 59

Query: 61  PFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACMLFAALSGSSPATVVAIG 120
           PFFILA +F+T GGVA+R+I F+ A VGH  GGL + GV AC LFAA+SGSSPATVVAIG
Sbjct: 60  PFFILAGNFLTHGGVAKRMINFATAMVGHWYGGLGLGGVVACALFAAISGSSPATVVAIG 119

Query: 121 SIVIAGMRQVGYSKEFAAGVICNAGTLGILIPPSIVMVVYAAAVEVSVGRMFLAGVIPGL 180
           SI++  M + G+ + F AGVI  +G LGILIPPS+VMV+YA A   SVG +F+AGV+PGL
Sbjct: 120 SILLPAMVKQGFPRRFGAGVITTSGALGILIPPSLVMVMYAVATNTSVGALFMAGVVPGL 179

Query: 181 MAGLMLMVTIYVMAKVKNLPKGEWLGWGEVAASAANASVGLLLIGIILGGIYGGIFTPTE 240
           +   +L VT  V+A+  N P+     W   A +   A  GL+L+ I++GGIY GIFTPTE
Sbjct: 180 VLATLLGVTTSVIARKNNYPRLPKASWATRAKAFREAIWGLMLVVIVIGGIYSGIFTPTE 239

Query: 241 AAAVASVYAFFVATFVYRDMGPLKSAPKPKDMGQFLTMLPKMLGQTVVYFIPSFFHADTR 300
           AAA+++VYAF +A FVY+DM PL+   K                                
Sbjct: 240 AAAMSAVYAFLIAVFVYKDM-PLRGVVK-------------------------------- 266

Query: 301 HALFEAGKLTVTLLFVIANALILKHVLTDEQVPQQIATAMLSAGFGPVMFLIVVNVILLI 360
             L  +  ++  LL++I NA++   VL +E +PQ IA  ++    G V FL+VVNV+LL 
Sbjct: 267 -ILLSSASMSAMLLYIITNAVLFSFVLANENIPQAIADWIVGKELGIVAFLLVVNVLLLA 325

Query: 361 GGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVA 420
            G FMEPS +++I+AP++FP+A++LGIDP+H GI+++VNME+GM  PPVGLNL+V SG+ 
Sbjct: 326 AGNFMEPSSIVLIMAPILFPVAMKLGIDPVHFGILIIVNMEVGMCHPPVGLNLYVASGIT 385

Query: 421 GMPMMAVVRAALPFLAVLFVFLIMITYIPWISTVLPNAV 459
            M +  +  A +P+L  +  FLI++TY P +S  LP A+
Sbjct: 386 KMGISELTVAVMPWLLTMLGFLIVVTYWPGLSLWLPRAL 424