Pairwise Alignments

Query, 785 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

Subject, 449 a.a., C4-dicarboxylate ABC transporter from Herbaspirillum seropedicae SmR1

 Score = 94.0 bits (232), Expect = 2e-23
 Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 28/182 (15%)

Query: 125 TLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGIVGAT 184
           TLL++ +F+L G  + +S    DL + +      +PGGL ++ V   A  AA  G   AT
Sbjct: 60  TLLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPAT 119

Query: 185 VVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTAQEAR 244
              +G   +P M R  YSP  A G+IAA GTLG ++PPSI ++        LY+ A E  
Sbjct: 120 CSAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMI--------LYAVAAEQ- 170

Query: 245 AQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKAPAVVLE 304
                              S+G LF A + PG++L LL+A YA   A      A AV   
Sbjct: 171 -------------------SLGRLFLAGIGPGVLLVLLFAGYAVYRARKEYRLAHAVYSA 211

Query: 305 GG 306
           GG
Sbjct: 212 GG 213



 Score = 84.0 bits (206), Expect = 2e-20
 Identities = 93/372 (25%), Positives = 166/372 (44%), Gaps = 35/372 (9%)

Query: 424 GLTVLMVLMGLVLAVGRGVSPSSDPKPLILGAIGVLLIALVDVVAIAPTTSPGITV---- 479
           GL +  V    + A   G SP++        AIG   I  +     +P  + GI      
Sbjct: 97  GLGIANVFACALFAAMAGSSPAT------CSAIGSAGIPEMRRRGYSPGFAAGIIAAGGT 150

Query: 480 LLIALPTLLALYGCRIAAGRSARNDLIRVVFPPLILIVAVLGSILGGITNP--TPAAALG 537
           L I LP  + +    +AA +S     +  + P ++L++   G  +           A   
Sbjct: 151 LGILLPPSITMILYAVAAEQSLGRLFLAGIGPGVLLVLLFAGYAVYRARKEYRLAHAVYS 210

Query: 538 AGGAIMLAAYRKLQDQGKSGKIIIWATFAVAICILVGVNFDLRINGRSGVSAETVIAFGV 597
           AGGA   +AY   +    + K+ +       + +L+GV   + + G     +ET      
Sbjct: 211 AGGA--KSAYLDDEHFTLAQKVEMLPRVLPFLILLIGVM--VALYGGLATPSETA----- 261

Query: 598 AYGAYL-FALFGLLYGCWVLFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGE 656
             GA L   L  ++Y    ++K   + P +  T K + M+  ++IG  LL   V+S+   
Sbjct: 262 GLGALLALVLIAVVYR---IYKPREIAPFLSSTIKESGMLL-LIIGMSLLYSYVMSY--- 314

Query: 657 HYIQQFLKSF--DSELKVFLIVMVVL---FILGFVLDFLEIIYIVIPIVGPVIYGGSFDP 711
            +I Q    +  D  L  +L++ V+L    +LGF L  + II +  PI+ P +    FD 
Sbjct: 315 LHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTAPIILPPLKAAGFDL 374

Query: 712 KWVTIMVAVNLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWM 771
            W  I++ V ++   + PP G  LF ++ +AP ++    + +G +PF+ +  + + +L M
Sbjct: 375 IWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAP-DIALGDVIKGTIPFLALMFLAVLLLCM 433

Query: 772 FPSIVTIVPALM 783
           FP I T++P L+
Sbjct: 434 FPGIATLLPDLL 445