Pairwise Alignments

Query, 785 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

Subject, 482 a.a., TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  152 bits (383), Expect = 5e-41
 Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 38/354 (10%)

Query: 459 LLIALVDVVAIAPTTSPGITVLLIALPTLLAL----YGCRIAAGRSARNDLIRVVFPPLI 514
           L + L+ ++  A T   G +V L+ +  L A+    Y   IA G  A    + ++ PP I
Sbjct: 133 LTVMLIGIILAASTGVIGASVTLLGVMALPAMMQQNYSKPIATGTIASAGTLGILIPPSI 192

Query: 515 LIVAV-------LGSILGGITNPTPAAALGAGGAIMLAAYRKLQDQGKSGKI----IIWA 563
           ++V +       LG +  G     P   LGA   I + AY  +  +          + W 
Sbjct: 193 MLVIMSDQLAISLGDLFMGAL--FPGLILGALYIIFIIAYGLINPKAMPAPPQTDEVGWD 250

Query: 564 TFA-VAICILVGVNFDLRINGR--SGVSAETVIAFGVAYGAYLFALFGLLYGCWVLFKGG 620
               V + ++  +   L + G   +G +  T  +   A GA L AL          FK  
Sbjct: 251 VVKDVLLAVVPPMFLILLVLGSIFAGFATPTEASGLGALGATLLALANGRLN----FK-- 304

Query: 621 VLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGEHYIQQF-LKSFDSELKVFLIVMVV 679
           VL  V R T   +  +  I + +    LV+  +GG+  IQ + L +F     + L ++ +
Sbjct: 305 VLKEVSRSTLNTSGYIVGIFLAANFFALVLRRYGGDEIIQGYVLSTFSDPYMIVLFILFI 364

Query: 680 LFILGFVLDFLEIIYIVIPIVGPVIYGGSF---------DPK--WVTIMVAVNLQTSFLT 728
           +F+LGF+LD++EI  I++P++ P+I G            DP   W  I+VAV LQTSFLT
Sbjct: 365 IFLLGFLLDWIEITIIIMPLMLPIIVGLDLAVPGFDQVRDPAVVWFAILVAVTLQTSFLT 424

Query: 729 PPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWMFPSIVTIVPAL 782
           PP GFALFYL+GV P  V+  HIY+G++PFV++Q++GL I++ FP++ T +PA+
Sbjct: 425 PPVGFALFYLKGVCPPGVSLGHIYKGIIPFVMLQLLGLFIVFQFPALTTWLPAI 478



 Score =  139 bits (349), Expect = 5e-37
 Identities = 90/292 (30%), Positives = 151/292 (51%), Gaps = 66/292 (22%)

Query: 9   EIGLIIVFFCLFGGILSGFPVAFAIGGAGVISFGIIAALDSAGILVHQAIDTSSQVYRDL 68
           E  ++ +F      +  G PVA+A+ G  +I F ++A +          +D +   +RD+
Sbjct: 15  EFAVLAMFLVFIYLLFRGIPVAYALVGVSLI-FALVAEI---------FLDPNRAAFRDI 64

Query: 69  VNSGVKPDSVSVFRYPDLPRVAEAVFPQGWEVAMDRNISFIVNRMNERVLAGASIETLLA 128
           +      D   +    D  R+         +V   R    IV               L+A
Sbjct: 65  IEF----DRTGI----DYQRL---------QVLSGRLFGNIVKN-----------PVLVA 96

Query: 129 VLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGIVGATVVTM 188
           + MF+ MG+ L++S +A  ++ +M ++FG L GGL+++++++G  LAASTG++GA+V  +
Sbjct: 97  LPMFIFMGLMLDQSGVAQRMMHSMQKLFGGLRGGLSLTVMLIGIILAASTGVIGASVTLL 156

Query: 189 GLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTAQEARAQEF 248
           G++ALP M++ NYS  +ATG IA++GTLG +IPPSI++V++                   
Sbjct: 157 GVMALPAMMQQNYSKPIATGTIASAGTLGILIPPSIMLVIM------------------- 197

Query: 249 GCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKAPA 300
             SD L        +S+G LF  AL PG++L  LY ++   Y L+NP+  PA
Sbjct: 198 --SDQL-------AISLGDLFMGALFPGLILGALYIIFIIAYGLINPKAMPA 240